RNA id: TU133729


Basic Information

Item Value
RNA id TU133729
length 248
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G117683
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2891860 ~ 2892359 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAGAAGGCAAGCCAGCGGAGGCAGTGTGATGCTTTGGGCAATGTTCTGCTGGGAAACCTTGGGTCCTGCCATCCATGTGGATGTTACTTTGACACGTACCACCTACCTAAGCATTGTTGCAGACCATGTACACCCTTTCATGGAAACGGTATTCCCTGGTGGCTGTGGCCTCTTTCAGCAGGATAATGTGCCCTGCCACAAAGCAAAAATGGTTCAGGAATGGTTTGAGGAGCACAACAATGAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133098 lncRNA downstream 21815 2869945 ~ 2870273 (-) True G117139
TU133095 lncRNA downstream 24656 2867203 ~ 2867432 (-) True G117136
TU133050 lncRNA downstream 144276 2747078 ~ 2747812 (-) True G117104
TU132884 lncRNA downstream 276029 2608574 ~ 2616059 (-) True G116959
TU132889 lncRNA downstream 297905 2592751 ~ 2594183 (-) True G116962
TU133950 lncRNA upstream 120303 3012638 ~ 3013091 (-) True G117881
TU133951 lncRNA upstream 127734 3020069 ~ 3020284 (-) True G117882
TU133953 lncRNA upstream 133445 3025780 ~ 3026250 (-) True G117884
TU133966 lncRNA upstream 153863 3046198 ~ 3046429 (-) True G117894
TU133968 lncRNA upstream 159163 3051498 ~ 3051844 (-) True G117896
CI01000021_02791299_02829637.mRNA mRNA downstream 62209 2790485 ~ 2829879 (-) True CI01000021_02791299_02829637
CI01000021_02620174_02687913.mRNA mRNA downstream 204175 2619568 ~ 2687913 (-) True CI01000021_02620174_02687913
CI01000021_02522404_02530893.mRNA mRNA downstream 361195 2522053 ~ 2530893 (-) True CI01000021_02522404_02530893
CI01000021_02503590_02509554.mRNA mRNA downstream 382534 2502568 ~ 2509554 (-) True CI01000021_02503590_02509554
CI01000021_02492524_02493429.mRNA mRNA downstream 398659 2492137 ~ 2493429 (-) True CI01000021_02492524_02493429
CI01000021_03088285_03098959.mRNA mRNA upstream 195690 3088025 ~ 3098959 (-) True CI01000021_03088285_03098959
CI01000021_03184886_03225117.mRNA mRNA upstream 292231 3184566 ~ 3227363 (-) False CI01000021_03184886_03225117
CI01000021_03246184_03250332.mRNA mRNA upstream 353676 3246011 ~ 3250332 (-) True CI01000021_03246184_03250332
CI01000021_03267771_03288743.mRNA mRNA upstream 374967 3267302 ~ 3288743 (-) True CI01000021_03267771_03288743
CI01000021_03319954_03323293.mRNA mRNA upstream 426775 3319110 ~ 3323340 (-) True CI01000021_03319954_03323293
TU132929 other downstream 178841 2712785 ~ 2713247 (-) True G116997
TU132800 other downstream 557772 2331314 ~ 2334316 (-) True G116893
TU132758 other downstream 681592 2209921 ~ 2210496 (-) True G116856
TU132617 other downstream 1529284 1361878 ~ 1362804 (-) True G116730
TU133963 other upstream 151684 3044019 ~ 3044787 (-) True G117893
TU133802 other upstream 945087 3837422 ~ 3931056 (-) True G117733
TU133799 other upstream 1035455 3927790 ~ 3931056 (-) False G117733
TU133801 other upstream 1035455 3927790 ~ 3931056 (-) True G117733
TU133831 other upstream 1152949 4045284 ~ 4045446 (-) True G117762

Expression Profile