RNA id: TU133160


Basic Information

Item Value
RNA id TU133160
length 202
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G117182
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3024032 ~ 3024233 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGCCCTAAGTCTTAATTTTGAACTATATATTTGTTTCATATTTTGATGCCTAACACTCTTCCATTTGTGAAATGTTTTGATTGAAGAGTGTGTTTGTGTTGTATTTCGTAACAATGCCTCTTGGTTTGTTGCTTAAGTGTCCAAATACTTTTTGGGGCCACTGTATATTGTGAGATATCGCTCAATAAAATACATCGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133142 lncRNA upstream 131503 2892107 ~ 2892529 (+) True G117164
TU133139 lncRNA upstream 134171 2889239 ~ 2889861 (+) True G117161
TU133097 lncRNA upstream 153705 2869955 ~ 2870327 (+) True G117138
TU133096 lncRNA upstream 155904 2867811 ~ 2868128 (+) True G117137
TU133020 lncRNA upstream 158877 2820589 ~ 2865155 (+) True G117075
TU133221 lncRNA downstream 215102 3239335 ~ 3299281 (+) True G117239
TU133181 lncRNA downstream 244911 3269144 ~ 3324870 (+) False G117202
TU133242 lncRNA downstream 269033 3293266 ~ 3293887 (+) True G117260
TU133193 lncRNA downstream 296364 3320597 ~ 3323372 (+) True G117211
TU133296 lncRNA downstream 344081 3368314 ~ 3368525 (+) True G117303
CI01000021_02930718_02985342.mRNA mRNA upstream 38690 2930718 ~ 2985342 (+) True CI01000021_02930718_02985342
CI01000021_02877008_02877864.mRNA mRNA upstream 145209 2876517 ~ 2878823 (+) True CI01000021_02877008_02877864
CI01000021_02581650_02610697.mRNA mRNA upstream 412425 2581650 ~ 2611607 (+) True CI01000021_02581650_02610697
CI01000021_02495559_02501217.mRNA mRNA upstream 522305 2495559 ~ 2501727 (+) True CI01000021_02495559_02501217
CI01000021_02402058_02447882.mRNA mRNA upstream 576150 2401679 ~ 2447882 (+) True CI01000021_02402058_02447882
CI01000021_03044076_03086657.mRNA mRNA downstream 19843 3044076 ~ 3086657 (+) True CI01000021_03044076_03086657
CI01000021_03101146_03115161.mRNA mRNA downstream 76720 3100953 ~ 3115468 (+) True CI01000021_03101146_03115161
CI01000021_03119361_03125084.mRNA mRNA downstream 95128 3119361 ~ 3126781 (+) True CI01000021_03119361_03125084
CI01000021_03164405_03179692.mRNA mRNA downstream 140172 3164405 ~ 3179949 (+) True CI01000021_03164405_03179692
CI01000021_03349081_03350266.mRNA mRNA downstream 324848 3349081 ~ 3351180 (+) True CI01000021_03349081_03350266
TU132002 other upstream 726837 2289817 ~ 2297195 (+) True G116236
TU131419 other upstream 1689623 1333998 ~ 1334409 (+) True G115691
TU131221 other upstream 2540068 480530 ~ 483964 (+) True G115519
TU133219 other downstream 213621 3237854 ~ 3243364 (+) True G117237
TU133183 other downstream 244911 3269144 ~ 3328233 (+) False G117202
TU133182 other downstream 300039 3324272 ~ 3328233 (+) True G117202
TU133500 other downstream 931913 3956146 ~ 3957752 (+) True G117484
TU133514 other downstream 1008767 4033000 ~ 4035676 (+) True G117493

Expression Profile