RNA id: TU133953


Basic Information

Item Value
RNA id TU133953
length 471
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G117884
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3025780 ~ 3026250 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGCATTTTCTGTAAAGGTCTTTCCAAAATTTGCATCCGAAATTTCCGCACGTTAAAAAATAAATACGACCCCACGTTGTGTCAATCACTGCCTCCGAAACTTTTGTCCGTCATAAAAAAATTCGGATCAGGTTCGATTTTCTGCGTTTTTCGTATCCATGGCACGCATTTTGAGAGACGTTTTGATAATTCAGAGCCACCGTACAAGCGAACGCCAAAATCCAGAATGCCATCTGACAAGTTGATCCACGTCGTCTACAGCACAAAGCAGCAGCACTGTATGACAAACAAAGTACGGAATACAAAGAGACAGAATATAAAGACAGATTGTGCCAGTATCACTAGCAAAGCATCAAACTGAGCCACTGACATCCTGAAGCAAACTTTGAAACGCTCGGGATAATCACTCAGCTCCTTGATGAGGTGGAACTCTTCTTCCTCTCTCTCTCTACGCAATCTTGACATTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133951 lncRNA downstream 5496 3020069 ~ 3020284 (-) True G117882
TU133950 lncRNA downstream 12689 3012638 ~ 3013091 (-) True G117881
TU133728 lncRNA downstream 133421 2892088 ~ 2892359 (-) False G117683
TU133729 lncRNA downstream 133445 2892088 ~ 2892335 (-) True G117683
TU133098 lncRNA downstream 155507 2869945 ~ 2870273 (-) True G117139
TU133966 lncRNA upstream 19948 3046198 ~ 3046429 (-) True G117894
TU133968 lncRNA upstream 25248 3051498 ~ 3051844 (-) True G117896
TU133971 lncRNA upstream 29028 3055278 ~ 3055643 (-) True G117899
TU133973 lncRNA upstream 32407 3058657 ~ 3058885 (-) True G117901
TU133974 lncRNA upstream 36566 3062816 ~ 3063059 (-) True G117902
CI01000021_02791299_02829637.mRNA mRNA downstream 195901 2790485 ~ 2829879 (-) True CI01000021_02791299_02829637
CI01000021_02620174_02687913.mRNA mRNA downstream 337867 2619568 ~ 2687913 (-) True CI01000021_02620174_02687913
CI01000021_02522404_02530893.mRNA mRNA downstream 494887 2522053 ~ 2530893 (-) True CI01000021_02522404_02530893
CI01000021_02503590_02509554.mRNA mRNA downstream 516226 2502568 ~ 2509554 (-) True CI01000021_02503590_02509554
CI01000021_02492524_02493429.mRNA mRNA downstream 532351 2492137 ~ 2493429 (-) True CI01000021_02492524_02493429
CI01000021_03088285_03098959.mRNA mRNA upstream 61775 3088025 ~ 3098959 (-) True CI01000021_03088285_03098959
CI01000021_03184886_03225117.mRNA mRNA upstream 158316 3184566 ~ 3227363 (-) False CI01000021_03184886_03225117
CI01000021_03246184_03250332.mRNA mRNA upstream 219761 3246011 ~ 3250332 (-) True CI01000021_03246184_03250332
CI01000021_03267771_03288743.mRNA mRNA upstream 241052 3267302 ~ 3288743 (-) True CI01000021_03267771_03288743
CI01000021_03319954_03323293.mRNA mRNA upstream 292860 3319110 ~ 3323340 (-) True CI01000021_03319954_03323293
TU133731 other downstream 133445 2891860 ~ 2892335 (-) False G117683
TU132929 other downstream 312533 2712785 ~ 2713247 (-) True G116997
TU132800 other downstream 691464 2331314 ~ 2334316 (-) True G116893
TU132758 other downstream 815284 2209921 ~ 2210496 (-) True G116856
TU132617 other downstream 1662976 1361878 ~ 1362804 (-) True G116730
TU133963 other upstream 17769 3044019 ~ 3044787 (-) True G117893
TU133802 other upstream 811172 3837422 ~ 3931056 (-) True G117733
TU133799 other upstream 901540 3927790 ~ 3931056 (-) False G117733
TU133801 other upstream 901540 3927790 ~ 3931056 (-) True G117733
TU133831 other upstream 1019034 4045284 ~ 4045446 (-) True G117762

Expression Profile