RNA id: TU133966


Basic Information

Item Value
RNA id TU133966
length 232
lncRNA type intronic
GC content 0.38
exon number 1
gene id G117894
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3046198 ~ 3046429 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATACCTGAAACATCTTCATGTTTTTGTTGTAGCTCTTGGGTGAACACAATAAAGTGAACACAATAAAACTACTTGAGGCAAGTATTAAAGGTGCAGAAAGCGATTTCTGAGAAATGCTGTTGATATATCAAATCACTTAAACAAACATGCCCCTATCCAAAAGGATCACACCACTATTTTTATAGCTCCGCCTCCAAATTCACAAACACACTATGCAACACAGGCACCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133953 lncRNA downstream 19948 3025780 ~ 3026250 (-) True G117884
TU133951 lncRNA downstream 25914 3020069 ~ 3020284 (-) True G117882
TU133950 lncRNA downstream 33107 3012638 ~ 3013091 (-) True G117881
TU133728 lncRNA downstream 153839 2892088 ~ 2892359 (-) False G117683
TU133729 lncRNA downstream 153863 2892088 ~ 2892335 (-) True G117683
TU133968 lncRNA upstream 5069 3051498 ~ 3051844 (-) True G117896
TU133971 lncRNA upstream 8849 3055278 ~ 3055643 (-) True G117899
TU133973 lncRNA upstream 12228 3058657 ~ 3058885 (-) True G117901
TU133974 lncRNA upstream 16387 3062816 ~ 3063059 (-) True G117902
TU133975 lncRNA upstream 16947 3063376 ~ 3063628 (-) True G117903
CI01000021_02791299_02829637.mRNA mRNA downstream 216319 2790485 ~ 2829879 (-) True CI01000021_02791299_02829637
CI01000021_02620174_02687913.mRNA mRNA downstream 358285 2619568 ~ 2687913 (-) True CI01000021_02620174_02687913
CI01000021_02522404_02530893.mRNA mRNA downstream 515305 2522053 ~ 2530893 (-) True CI01000021_02522404_02530893
CI01000021_02503590_02509554.mRNA mRNA downstream 536644 2502568 ~ 2509554 (-) True CI01000021_02503590_02509554
CI01000021_02492524_02493429.mRNA mRNA downstream 552769 2492137 ~ 2493429 (-) True CI01000021_02492524_02493429
CI01000021_03088285_03098959.mRNA mRNA upstream 41596 3088025 ~ 3098959 (-) True CI01000021_03088285_03098959
CI01000021_03184886_03225117.mRNA mRNA upstream 138137 3184566 ~ 3227363 (-) False CI01000021_03184886_03225117
CI01000021_03246184_03250332.mRNA mRNA upstream 199582 3246011 ~ 3250332 (-) True CI01000021_03246184_03250332
CI01000021_03267771_03288743.mRNA mRNA upstream 220873 3267302 ~ 3288743 (-) True CI01000021_03267771_03288743
CI01000021_03319954_03323293.mRNA mRNA upstream 272681 3319110 ~ 3323340 (-) True CI01000021_03319954_03323293
TU133963 other downstream 1411 3044019 ~ 3044787 (-) True G117893
TU133731 other downstream 153863 2891860 ~ 2892335 (-) False G117683
TU132929 other downstream 332951 2712785 ~ 2713247 (-) True G116997
TU132800 other downstream 711882 2331314 ~ 2334316 (-) True G116893
TU132758 other downstream 835702 2209921 ~ 2210496 (-) True G116856
TU133802 other upstream 790993 3837422 ~ 3931056 (-) True G117733
TU133799 other upstream 881361 3927790 ~ 3931056 (-) False G117733
TU133801 other upstream 881361 3927790 ~ 3931056 (-) True G117733
TU133831 other upstream 998855 4045284 ~ 4045446 (-) True G117762
TU134763 other upstream 1703668 4750097 ~ 4767372 (-) True G118639

Expression Profile