RNA id: TU133300


Basic Information

Item Value
RNA id TU133300
length 266
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G117306
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3375046 ~ 3375311 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCACACTGAGGACAATTGAGGGACTCAAACACAACTATTAAAAAAGGTTCAAACATTCACTGATGCTCCAGAAGGAAGCACGATGCATTAAGAGTCGGGGGGTGAAAACTTTTGAACAGGATGAAGATGTCCAAATTTTTCTTATTTTGTTTAAATATCAATTTTCTTCATTTAGTACTGCCCTTTGGAAGCAACAGAAGATACCTACATGTTTCCCGGAGACAAATTAAGTACAATTTACCTTGATCTTCAAATTCAAAAAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133296 lncRNA upstream 6521 3368314 ~ 3368525 (+) True G117303
TU133181 lncRNA upstream 50176 3269144 ~ 3324870 (+) False G117202
TU133193 lncRNA upstream 51674 3320597 ~ 3323372 (+) True G117211
TU133221 lncRNA upstream 75765 3239335 ~ 3299281 (+) True G117239
TU133242 lncRNA upstream 81159 3293266 ~ 3293887 (+) True G117260
TU133302 lncRNA downstream 1411 3376722 ~ 3376972 (+) True G117308
TU133341 lncRNA downstream 36587 3411898 ~ 3417615 (+) True G117346
TU133321 lncRNA downstream 75904 3451215 ~ 3478399 (+) True G117327
TU133360 lncRNA downstream 137401 3512712 ~ 3513001 (+) True G117365
TU133361 lncRNA downstream 161058 3536369 ~ 3537382 (+) True G117366
CI01000021_03349081_03350266.mRNA mRNA upstream 23866 3349081 ~ 3351180 (+) True CI01000021_03349081_03350266
CI01000021_03164405_03179692.mRNA mRNA upstream 195097 3164405 ~ 3179949 (+) True CI01000021_03164405_03179692
CI01000021_03119361_03125084.mRNA mRNA upstream 248265 3119361 ~ 3126781 (+) True CI01000021_03119361_03125084
CI01000021_03101146_03115161.mRNA mRNA upstream 259578 3100953 ~ 3115468 (+) True CI01000021_03101146_03115161
CI01000021_03044076_03086657.mRNA mRNA upstream 288389 3044076 ~ 3086657 (+) True CI01000021_03044076_03086657
CI01000021_03382666_03386768.mRNA mRNA downstream 5458 3380769 ~ 3386900 (+) True CI01000021_03382666_03386768
CI01000021_03428718_03432817.mRNA mRNA downstream 53265 3428576 ~ 3433102 (+) True CI01000021_03428718_03432817
CI01000021_03510302_03551418.mRNA mRNA downstream 134937 3510248 ~ 3551572 (+) True CI01000021_03510302_03551418
CI01000021_03562381_03570309.mRNA mRNA downstream 186976 3562287 ~ 3571272 (+) True CI01000021_03562381_03570309
CI01000021_03594629_03615777.mRNA mRNA downstream 219318 3594629 ~ 3616329 (+) True CI01000021_03594629_03615777
TU133183 other upstream 46813 3269144 ~ 3328233 (+) False G117202
TU133182 other upstream 46813 3324272 ~ 3328233 (+) True G117202
TU133219 other upstream 131682 3237854 ~ 3243364 (+) True G117237
TU132002 other upstream 1077851 2289817 ~ 2297195 (+) True G116236
TU131419 other upstream 2040637 1333998 ~ 1334409 (+) True G115691
TU133500 other downstream 580835 3956146 ~ 3957752 (+) True G117484
TU133514 other downstream 657689 4033000 ~ 4035676 (+) True G117493
TU134547 other downstream 1467422 4842733 ~ 4886292 (+) True G118432
TU135922 other downstream 3424833 6800144 ~ 6860606 (+) True G119701

Expression Profile