Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU135410 |
| length | 2980 |
| lncRNA type | inter_gene |
| GC content | 0.33 |
| exon number | 1 |
| gene id | G119229 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000021 |
| NCBI id | null |
| chromosome length | 7014339 |
| location | 5782611 ~ 5785590 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU135444 | lncRNA | downstream | 186368 | 5596009 ~ 5596243 (-) | True | G119263 |
| TU135443 | lncRNA | downstream | 186686 | 5595611 ~ 5595925 (-) | True | G119262 |
| TU135434 | lncRNA | downstream | 236384 | 5546021 ~ 5546227 (-) | True | G119253 |
| TU135390 | lncRNA | downstream | 259685 | 5522630 ~ 5522926 (-) | True | G119212 |
| TU135320 | lncRNA | downstream | 263687 | 5518627 ~ 5518924 (-) | True | CI01000021_05519376_05522107 |
| TU135516 | lncRNA | upstream | 97615 | 5883205 ~ 5883413 (-) | True | G119332 |
| TU135546 | lncRNA | upstream | 214660 | 6000250 ~ 6000500 (-) | True | G119359 |
| TU136035 | lncRNA | upstream | 309568 | 6095158 ~ 6095456 (-) | True | G119787 |
| TU136039 | lncRNA | upstream | 312487 | 6098077 ~ 6098327 (-) | True | G119791 |
| TU136040 | lncRNA | upstream | 313929 | 6099519 ~ 6099884 (-) | True | G119792 |
| CI01000021_05729351_05729635.mRNA | mRNA | downstream | 52516 | 5729284 ~ 5730095 (-) | True | CI01000021_05729351_05729635 |
| CI01000021_05693567_05698301.mRNA | mRNA | downstream | 84310 | 5693173 ~ 5698301 (-) | True | CI01000021_05693567_05698301 |
| CI01000021_05651690_05674009.mRNA | mRNA | downstream | 108230 | 5651616 ~ 5674381 (-) | True | CI01000021_05651690_05674009 |
| CI01000021_05638487_05640144.mRNA | mRNA | downstream | 142467 | 5637900 ~ 5640144 (-) | True | CI01000021_05638487_05640144 |
| CI01000021_05588398_05594436.mRNA | mRNA | downstream | 188175 | 5588344 ~ 5594436 (-) | True | CI01000021_05588398_05594436 |
| CI01000021_05797550_05804777.mRNA | mRNA | upstream | 11118 | 5796708 ~ 5804777 (-) | True | CI01000021_05797550_05804777 |
| CI01000021_05830018_05845856.mRNA | mRNA | upstream | 43715 | 5829305 ~ 5846136 (-) | True | CI01000021_05830018_05845856 |
| CI01000021_05876056_05879110.mRNA | mRNA | upstream | 89978 | 5875568 ~ 5879110 (-) | True | CI01000021_05876056_05879110 |
| CI01000021_05892651_05906514.mRNA | mRNA | upstream | 106263 | 5891853 ~ 5907521 (-) | True | CI01000021_05892651_05906514 |
| CI01000021_05918146_05919901.mRNA | mRNA | upstream | 132107 | 5917697 ~ 5921113 (-) | True | CI01000021_05918146_05919901 |
| TU135414 | other | downstream | 365 | 5781074 ~ 5782246 (-) | True | G119233 |
| TU135448 | other | downstream | 168622 | 5613442 ~ 5613989 (-) | True | G119267 |
| TU135394 | other | downstream | 251685 | 5524855 ~ 5530926 (-) | True | G119215 |
| TU134934 | other | downstream | 628320 | 5153891 ~ 5154291 (-) | True | G118801 |
| TU134763 | other | downstream | 1015239 | 4750097 ~ 4767372 (-) | True | G118639 |
| TU136221 | other | upstream | 1017265 | 6802855 ~ 6807625 (-) | True | G119967 |
