RNA id: TU136035


Basic Information

Item Value
RNA id TU136035
length 299
lncRNA type intronic
GC content 0.36
exon number 1
gene id G119787
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 6095158 ~ 6095456 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGAGGTCGTTTTTATTTCAAGGTGGAGCACCAATGAGTTGAGATGCTAACCGTGGATCAGGGTGAGTATTGTTGTGTGAAATAATAGTTCATGGTGACTCATCCTTGACTCTCTTCTGTTTGAGCGTGAGCGCTCAAGGCAAACACAAATTTAACTATAGGAATGGATGACTACACTGCAAAAAATAATTCTCTTTATATGTATCGTGTGTTCTCCAGTAGAAATATCTAAACAGACTATGCCATTCAAAAGTTTGGGGTCAGTAAGATTTTTTTTATAATTGTTTAAATGATGTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135546 lncRNA downstream 94658 6000250 ~ 6000500 (-) True G119359
TU135516 lncRNA downstream 211745 5883205 ~ 5883413 (-) True G119332
TU135410 lncRNA downstream 309568 5782611 ~ 5785590 (-) True G119229
TU135444 lncRNA downstream 498915 5596009 ~ 5596243 (-) True G119263
TU135443 lncRNA downstream 499233 5595611 ~ 5595925 (-) True G119262
TU136039 lncRNA upstream 2621 6098077 ~ 6098327 (-) True G119791
TU136040 lncRNA upstream 4063 6099519 ~ 6099884 (-) True G119792
TU136042 lncRNA upstream 10628 6106084 ~ 6106441 (-) True G119794
TU136046 lncRNA upstream 39392 6134848 ~ 6135377 (-) True G119798
TU136062 lncRNA upstream 60590 6156046 ~ 6156301 (-) True G119814
CI01000021_05961867_05972445.mRNA mRNA downstream 122713 5961595 ~ 5972445 (-) True CI01000021_05961867_05972445
CI01000021_05942137_05950309.mRNA mRNA downstream 144849 5941889 ~ 5950309 (-) True CI01000021_05942137_05950309
CI01000021_05928007_05937412.mRNA mRNA downstream 157387 5926775 ~ 5937771 (-) True CI01000021_05928007_05937412
CI01000021_05918146_05919901.mRNA mRNA downstream 174045 5917697 ~ 5921113 (-) True CI01000021_05918146_05919901
CI01000021_05892651_05906514.mRNA mRNA downstream 187637 5891853 ~ 5907521 (-) True CI01000021_05892651_05906514
CI01000021_06182218_06243950.mRNA mRNA upstream 86762 6182218 ~ 6243950 (-) True CI01000021_06182218_06243950
CI01000021_06258993_06262409.mRNA mRNA upstream 163537 6258993 ~ 6262544 (-) True CI01000021_06258993_06262409
CI01000021_06301339_06309593.mRNA mRNA upstream 205397 6300853 ~ 6309593 (-) True CI01000021_06301339_06309593
CI01000021_06310563_06348487.mRNA mRNA upstream 215018 6310474 ~ 6348487 (-) True CI01000021_06310563_06348487
CI01000021_06402127_06406030.mRNA mRNA upstream 305767 6401223 ~ 6406030 (-) True CI01000021_06402127_06406030
TU135414 other downstream 312912 5781074 ~ 5782246 (-) True G119233
TU135448 other downstream 481169 5613442 ~ 5613989 (-) True G119267
TU135394 other downstream 564232 5524855 ~ 5530926 (-) True G119215
TU134934 other downstream 940867 5153891 ~ 5154291 (-) True G118801
TU134763 other downstream 1327786 4750097 ~ 4767372 (-) True G118639
TU136221 other upstream 707399 6802855 ~ 6807625 (-) True G119967

Expression Profile