RNA id: TCONS_00003185


Basic Information

Item Value
RNA id TCONS_00003185
length 5881
lncRNA type antisense_over
GC content 0.38
exon number 4
gene id XLOC_000735
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 55184764 ~ 55191262 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTATTGGTTCTCTCTGTTTATTGTACTGATGTGAAACAGACATCTCTTAATTTATGTATGCTGTATATTATATTCATATGTATAAAAAACATCCAGtctaatagtttttgtttttctccaaCTACTTCCACAGAATACAAAAATCAAACCCAGCTGTGATTTATCAAATAAGCACGAGAACGAACAGAAACACGTAGAGGTCCTCTGAGACGGACTTTGACCAccaaactgacacacacacacacagagagagtcgcgttgtgttttttttttttggcaccagAGTTCAGGAGAAAACCCTCTCAGCTCACGTGGAAAACTCATGAGCTCTTTTATTAGCTTGAAGCTACGCATGCAACTAGCCGTCCTGTGTTCAGATTGTTAGGTGGAGATGACGAAAACGTTACTATCTACTGGCTCTCTCTGATGCGCATTATGCTTTTGAGTTAGAATAAATGTCTGAGCTTGATTTAAAGCAAGAGACTTCAAATttgtgctgcatcccaattcgcatTCTTATAGGCTACTACGTCCTAAAACAAAGTACTTTTTTGTGAAGAGCTTAGTTAcgtcccctgtcaatcatctccacacatcatccacatttcttccaCATCTAATTACCTACAGTAAAGGAGATTCAGCAGaagcaggttaatctgccatttACGAGTCTTACATAAAGAAATGTTACGTTGGCAATCTCTAAAGTGAAGAATGGGGGGTTTGATAGTGACATTAGTGAAGAACGGGGAGTTATGATAGTTACGTTAGCGATCTCTAAAATAAAGAACGGGGGGTATAATAGTTACGTTAGCGATCTCTTAAATGAAGAACGGGGGGTATGATAGTTACGTTAGCGATCTCCAAAGTAAAGAACGGGAGGTATAACAGTTACGTTAGCGATCTCCAAAGTAAAGAACGGGAGGTATAACAGTTACGTTAGCGATCTCCAAAGTAAAGAACGGGAGGTATAACAGTTACGTTAGCGATCTCCAAAGTAAAGAACGGGAGGTATGATAGTTATGTTAGCGATCTCCAAAGTGAAGAACGGGGAGGTTAGCGATCTCCTAAATGAAAAACGGGGTATGACAGTGACATTAGCAATCTCTAAAGTGAAGAACTGGGGATATGACAGTGACGTTAGTGAAAAGGGAGGGGGGGTAGTGTGTTGGAGGGCTGTGTGGGGGTATGATAGTGACGTTAAATGTATCTCATGGCCTCCCCGTTACCTGTCGTGGGGCCCCTATATTGACAGGGCCCTATGCACTCTGTCACCCTTTTCCCCCACTTATTACGGCCCATTGGTCAGCATTCACTGTTTATAGATATAGCTAACGCTGTTTTCCCTACCCTgccttttcttaaaaaataacatttttacaacagtaaaatatacatttgattCACCATGAACATGttgtttagttaaaaaaatgtaGAAGATTAGCGAACAGGCTTCCGATTGATTAAATGACAAATAGTTTACTAACAAAAGCTGTTTATTCTGTGTAGTGACGCCTCTcctacattgacttccattaaaacaaaatggCCTCTGGTCTCCTTTCTCACATACTGGCGTTAGCATTAGCCATTATACCTTTTCAGTTAAAGATTTCCAGCTTGGCTTTGTTGGTTCTACATTTCGAATTTCTATTGGAAATAGTAGACCACTTGGAATACCTTTGGCATATTTTCGACATACTCTAGTTTGGGACATACGTATTCtattttcgaatactatttaggatggacaGTATGCTAATTGGGACGCAGCATTGGTCTCTAAATACTTTGGCTAATTTGCAGATCTGATCTAGCATTGGTTTTGGCTGTCGAGTGGCGTGTCGCGTCTATAGAGGGCCTCTCAATGAAAGCTTTTAAACAACAGTTTCATCACCAAGAATCACAATTCATGGATATACAGTGTATAgatatacataaaacaaataatcaaCATGAAGAAGTGAAAAAACTAACGTTGTATCTTCAGAATATTACAAACCCACACGCATGAATGACCTCGAATGATGCTACATTTGCCTTAATAATGACTCTTTCCATATTCCCTATTCATAGTTCTGGtccttaaaataatacaaataataagaaATTTGGCAAAACAAATCTGAGCTGTATATGATGCTGTGTTTTAACATAAGAAACAATCGTATACATTTACAGCTGCTCTAGGTGTTTGAtgctacattattttatttaatcaaaacagatgaaattgtaaaaataaatgtgcattcatttccatgtgtgtttttttattcattaattaaaggCAGAGTTCTGTCAGAGATTAAAATATATGCATTATTTACTCTCTTTCAATTGGTTATAAACATGTACGAGTTTCTTTGTCCTGTTGAACACCcaagaagatattctgaataaagctgaaacatccattgacttccgtagtaggaaaaacagtcaatggtttacatctttcttcaaaatatcttcttttgtgttcaacaaaagatcataaagatttgaaacatgggtgagtaaataattgatttaatacttctgagtgaactacccctttaatagtGATGATCATTGAGTGAAAATGATTGTGATTGATTTGTTATTAATATGTTCGGGATGCTGAGAGCCGTTGGTGGCGCGCTGCTTTCTGACAAGTGGGCGTGGCTCCGTTTCATTCAGCCAATCGGACATCAGTGGGCGGGGTGTTTTTGCTGGTCTCGTAAGGCAGTGAGGATTTCAGGCCTCCTCATTACATTCGGTAACACGGAGCACAAGCCCAGACATACACTGGCTGAACGCACACCCAGGCTCAAATTGCGATCGTGTGTGAATTAATACGACACAGAAACTACGATGGAAAACAGCGTGGAAGTGGAAGTACTAGAGGAGTTTGGGATCTCTTCTGAGGTATTGTCTAACATCTAGCTCCATAGCACCATTTCCATTCACCTTGATCAAAAAACATCTACCGAAAGAcagatttaaaagaaaactcGAGCATCTGCGACATTACGTTGACTACTTACGGAAAAACAGGCCGCTGAGATGGCCGTTACATTTGGGTCTCCGTTATTTTCAATTAAACAGCGGAGGAAATTATTCGGCTTATACTACGATTACCACAACTAGAAATGCTGTTCAGGTGTTACATTTCAAGACTATTGTCAGGTTTTTCCTCATCAAATTGCACTTATATTTAGAAAACCTCATGTTAGTTTCTTATTCAGTTGAAATAACGTTTAAAAAAATGATGCACATCCGAGGTGGTGATGCGGTCGTGACTTTACATCATGGGTgcgcattattttctaataattcaactgacCGGAGTcaattatttttcttatactaTGACTAGAAACGCTGTAAGATgttaaatttaaagtaatttGTCAGGTTTTTTTCATCAAATTGCTTTTTGAGTAAGGACTAGTTTCTTACTCCATTGAAATATCAAAAAATAATGCACTCGTAAGATGGTGATGCGGTCATGGCGtgaattattttctaataattcaacggACTGGACtcaattattttgcttatactcTAGTTCACGCACCTATATAAACTGTTCAGATGTTgcatttcagacatttgtcaggtttttaaTCCTTAAACCACTCCTGTGTGTAGGACTAGTTTCTTCCAACAGCTCTTTGTTGTGTTTTGATATGATTTTTGAGTGTTGTAGCTGTGAAACAACTGAAATCATTTAGCGTAGTGATATGGAACCGCTCAAAAcctgctggaactactttagctgtgtgcttaTCTGAAAATAACGGCACACCTTCGATTGCACAGCAGCAAATTAGAATTAAGCATTTATCAGTCTCAGAATGcttcatgctgcgttcacaccagatgcggaagaagcatcaagcgcgagtgatttacatgttaagtcaatgcaaaggcgcAAATAGACATCATGCGGCGTGATACGTGTGAATGAGGTGGTGCAAATGACGAAATTTGCGCAAAAGACTCGGTGCAAGTTGAGAATTTTGTGCGATTGATGCGCATGGCGCTTCTGAACTACAGCGGACATTCGCACCAATTTgcaaccaatcagaagcttcctTATGTGGTGGCGTGTTTATGTTGTAGCGCCTGCtgttggtgtcccaggggaaaataCTCCTAACGACACtgacaacagttgatcaaactgggctcggctcagtcggaagcaccgctaaaagcttccatcatccaggtatagtttctggaggagtttaggagctcacagagctgagtgcatctctgaaagaatctagtggactccAAATCCAATCGTCTAGCGGACTCCGAACgaatcaacactgtttttcagccttcataaagcacataaacacaactattctctcaataaaatccatgttagccatttagcaacaaagctagttACCggtcagacagaagccctgcccatcacgcgaatctgcatctgttgtgaagtgaatttgatgagcaaatgaagcggatttgacgagCAAATGAAGCAAGagaactcaaaatgttcacgcgtaTATTTACGaacgaatagcgcgatttatctgcACGTACCgcttctggtgtgaacacaacatTAGAATGCACCTTCGAATGCTcggcagccaatcagaattaagcattTAACAGTTTTGGAATGCTTTAGAACACACCTTCTAATgctcagcagccaatcagaattaagcattTAACAGTCTTGGAATGCTTAAGAATGCACCTTTGAATgctcagcagccaatcagaatgaagcaTTCAACATTTTGTCTCCAGCAAAATAATTTCGAATTAATTTTTCAGTTTCTGTCAGCAGAGCTCGAGATAAACCTTGAAGTTTAAaacactttaacatttaaaattgatCGACCTGGTCGAAATGATTGACCAACACTGTATTTACTTGAGAAACTTAAAAACATAAACTGTCTGCTAATACTCTGTCATTTTTTTTGCTCGGTTGCAGGTTTCAATTCTCTCTAaatgttaatataacattttaattctgTAACATTTGATAGTTTATTCAGTTGGCACTGCCTGTAAAAGGACTGGCGCTCAGATTCATAAATCGTACAATATATACATTAAAACGCAGCCCTCATTTCAAATGGGCTTAGATTTCACATATCTATTATCATTGTAACTAAGAAACTATCATACCTGTCAGGGAAAGTCTCATTTAAATGTCAcctcaaaatcaaataaaaacacataagCCACTATATATGATGTTTGAAAACTCTCACTACTGCAATGCAAAATATCATTAAAGTAACACAGTAGAATAATGTAGAACAATTACGTACGgtttaaggctgcatttatttgattaaaaacagtatttttttacaataatttaaaatgtctcatttctaatttattgtttttatattatccAAATTTATTGTTGTAATAGCAAAGCCTAAATGTTAGCAATTAGATACGaactttaaaatggcggccgtgtgaaataagcgtatactagaaacttccagggaggtgtgttaaaggaagttggagcttaactatgcaggacactgagTTTGCACATCCCTAGTACAAGTGCTTAGCTTAAATGCTTTTGTATCACAGTAATGAGAATATCAAGTCACGTTTTGCcaaaaaaagtcctaaaatgagcttagtttttatttttatttgattttgggGTGAGATTTGACCCGATATCTTCTCAACGGGTTTGTCTTAGTGAGATTTCCCCTTAAAGCACATCAGTTCACCCGTAATaatcaacttttattttgaaatcctCTGAATGTTCTCGACGGCTCCGCGCTTCATCATCTCCGTGATACACTTCCTGTCAATAAAAGCTGGAGCTGAGCCAGAAAGAGGG

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0006026 aminoglycan catabolic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004568 chitinase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0008061 chitin binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001218 lncRNA upstream 96712 55085645 ~ 55088052 (+) True XLOC_000731
TCONS_00001217 lncRNA upstream 99901 55080817 ~ 55084863 (+) False XLOC_000731
TCONS_00003183 lncRNA upstream 199467 54959492 ~ 54985297 (+) False XLOC_000729
TCONS_00003184 lncRNA upstream 205989 54974195 ~ 54978775 (+) True XLOC_000729
TCONS_00001210 lncRNA upstream 278057 54905750 ~ 54906707 (+) True XLOC_000726
TCONS_00001229 lncRNA downstream 55070 55246332 ~ 55247253 (+) True XLOC_000736
TCONS_00001234 lncRNA downstream 102569 55293831 ~ 55294283 (+) False XLOC_000739
TCONS_00003219 lncRNA downstream 123212 55314474 ~ 55579436 (+) True XLOC_000741
TCONS_00003220 lncRNA downstream 135304 55326566 ~ 55343851 (+) False XLOC_000742
TCONS_00003221 lncRNA downstream 135343 55326605 ~ 55343851 (+) True XLOC_000742
TCONS_00001225 mRNA upstream 39679 55137961 ~ 55145085 (+) False XLOC_000734
TCONS_00001223 mRNA upstream 40092 55137943 ~ 55144672 (+) False XLOC_000734
TCONS_00001222 mRNA upstream 40164 55137943 ~ 55144600 (+) False XLOC_000734
TCONS_00001226 mRNA upstream 40201 55140970 ~ 55144563 (+) True XLOC_000734
TCONS_00001224 mRNA upstream 40352 55137958 ~ 55144412 (+) False XLOC_000734
TCONS_00001227 mRNA downstream 47898 55239160 ~ 55247253 (+) False XLOC_000736
TCONS_00001228 mRNA downstream 48448 55239710 ~ 55246945 (+) False XLOC_000736
TCONS_00001230 mRNA downstream 73450 55264712 ~ 55275813 (+) True XLOC_000737
TCONS_00001231 mRNA downstream 87862 55279124 ~ 55287260 (+) True XLOC_000738
TCONS_00001232 mRNA downstream 102162 55293424 ~ 55299173 (+) False XLOC_000739
TCONS_00001221 other upstream 56185 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 998608 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 1123554 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 1796883 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001160 other upstream 1816730 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001233 other downstream 102363 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001304 other downstream 2156636 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 2968889 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 3940030 59131292 ~ 59131406 (+) True XLOC_000888