RNA id: CI01000026_08474877_08483134.mRNA



Basic Information


Item Value
RNA id CI01000026_08474877_08483134.mRNA
length 1388
RNA type mRNA
GC content 0.46
exon number 8
gene id CI01000026_08474877_08483134
representative True

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8474877 ~ 8483268 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGGTCTAAGAGTATCAGCATATTTGGATGATCTATTACTGTGTGCTGCATCATGGCAGCAGGCAGAGAGAGAGACAAAAATGCTTGTGTCTCATTTGGAGAGCTTAGGCTTCAAGATAAACAAGACAAAAAGCTGCTTGGTGCCCACACAAGAGATAATTTACCTGGGTCTCAGACTGAACTCAGACCTGTATCAAGCATTTCTGTCGGAGGAGTGCAACAGACCAGTTCGGGGACTGTTTATCCCTTTTTCAAAAAGGAAACAGAGTTCCATTCAGACTTTGTTTACGTCTTCTGGGGCTGATGTTCTTGACAGTTTCTGTCATTCTACTGGAACTGTTGTGAATGAGGGAGTTCCAGCACTGGACAACGGCGCAGTGCTTGTGTCCAAAACGCCACCTCAACCGCAAAATGATAGTGACGTCACTCTGCATGTGCACTCTCCATCATTGGATTGGTCACGCCCTGAGGCATTTCCCATAGTAAAATACCTCACTCATGTTATCAGAGAACCAGGGTTACCGTACGTGTTGTGCACGGCTCAGGACAAGGATGCTGTCAGACTGACATTGGAACAGATTGATGTAATTCGTCGTGTATGTACTGAAACCTCATACCTGGAACTGGTCACCACAGCTGAAGGAATGAGGAATAGTACAAAAATCGCATGTCTCATCAGTGTGGAGGGAGGCCACTCCATCGACAGCAGTTTACCAGCACTACGCATGTTCTACCAGCTTGGAGTAAGATCCATGGCCCTCACACACACCTGCAACACGCCATGGGCTGAGAGCTCATCTAGTTTTTACTCATTTTACCAGCGGAAGAACAACAGCTTGACAGAATTTGGCAGGGAAGTGGTGAAAGAGATGAACAGGTTGGGAATGCTGATTGATCTGTCTCATAGTTCCTGGGAGACAGCCAGAGCAGTGCTGAATCATTCTACCGCTCCAATTATTTTCAGCCACTCCTCAGCCTATGCTATCTGTAACAATACTCGCAACGTACCTGACGACCTGCTGCAGCGTCTGAAAGCAAATGGTGGGCTTATCATGGTAAACTTCTACAGCCTTTTTGTAGCATGTTCAGATACCACAGACGTGTCTACTGTGGCTGGGCTGGAGGATGTCTCCAAATACCCAGCACTAATTGAGGAGCTGATATCAAGGAACTGGAGTGAGGAAGAGCTGGCAGGAGTGCTAAGACTGAACTTCCTTAGAGTGTTCCAAAAGGTTGAGAAGGTCAGGAAATAATTTCTTGTGTTCAGTTCCCAGTTCAGTTAGGTCAGGAAAAGTATCTATAAATCGTGGCCTCTTTAGGGGTAGTACAAATATATACTGTAGCACACGCATAGTAAAACGATAGTGAATATAACACTGATACACGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU149090 lncRNA upstream 20637 8454013 ~ 8454240 (+) True G131098
TU149080 lncRNA upstream 63993 8410642 ~ 8410884 (+) True G131088
TU148985 lncRNA upstream 142162 8332107 ~ 8332715 (+) True G131015
TU149022 lncRNA upstream 163128 8311533 ~ 8311749 (+) True G131048
TU149020 lncRNA upstream 165103 8309566 ~ 8309774 (+) True G131046
TU149045 lncRNA downstream 3203 8486471 ~ 8497992 (+) False G131071
TU149047 lncRNA downstream 3203 8486471 ~ 8497992 (+) False G131071
TU149053 lncRNA downstream 3203 8486471 ~ 8497992 (+) False G131071
TU149052 lncRNA downstream 6716 8489984 ~ 8497992 (+) True G131071
TU149101 lncRNA downstream 37506 8520774 ~ 8521442 (+) True G131108
CI01000026_08454661_08461606.mRNA mRNA upstream 12956 8454661 ~ 8461921 (+) True CI01000026_08454661_08461606
CI01000026_08447474_08449558.mRNA mRNA upstream 24266 8447396 ~ 8450611 (+) True CI01000026_08447474_08449558
CI01000026_08421799_08434134.mRNA mRNA upstream 40684 8421683 ~ 8434193 (+) True CI01000026_08421799_08434134
CI01000026_08313929_08318869.mRNA mRNA upstream 155986 8311795 ~ 8318891 (+) True CI01000026_08313929_08318869
CI01000026_08297901_08307596.mRNA mRNA upstream 167248 8297857 ~ 8307629 (+) False CI01000026_08297901_08307596
CI01000026_08944583_08947981.mRNA mRNA downstream 461258 8944526 ~ 8947993 (+) True CI01000026_08944583_08947981
CI01000026_08950735_08960908.mRNA mRNA downstream 467395 8950663 ~ 8961146 (+) True CI01000026_08950735_08960908
CI01000026_09076625_09079154.mRNA mRNA downstream 591948 9075216 ~ 9079338 (+) True CI01000026_09076625_09079154
CI01000026_09175446_09178464.mRNA mRNA downstream 691981 9175249 ~ 9178488 (+) True CI01000026_09175446_09178464
CI01000026_09339450_09352303.mRNA mRNA downstream 856182 9339450 ~ 9353177 (+) True CI01000026_09339450_09352303
TU148972 other upstream 175463 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 285804 8188374 ~ 8189073 (+) True G130967
TU148442 other upstream 1378225 7095053 ~ 7096652 (+) True G130552
TU146291 other upstream 2148092 6326196 ~ 6326785 (+) False G128757
TU149067 other downstream 18140 8501408 ~ 8506787 (+) True G131077
TU150881 other downstream 1085471 9568739 ~ 9569160 (+) False G132667
TU151441 other downstream 1676551 10159819 ~ 10161961 (+) True G133192
TU151694 other downstream 2587500 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 2761665 11244933 ~ 11255073 (+) True G133497

Expression Profile