RNA id: CI01000026_08944583_08947981.mRNA



Basic Information


Item Value
RNA id CI01000026_08944583_08947981.mRNA
length 1158
RNA type mRNA
GC content 0.52
exon number 3
gene id CI01000026_08944583_08947981
representative True

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8944526 ~ 8947993 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATGAAAAGCGGGATTAATTGCGTAATTCCGGGCTGACTGTCGCAGATAGCTGATAATGATGTGTGCGGGGCGTCCAGTTGAATCGTGGCAGCGTGGCTTCTGCCAGCAGCCGGTTGGATGGGACTCGCTCGCTGTTCATCTCTCTAATGAGACATTTCGGGGAGAAGACGAAGCAACCTCTGGGCACCCAATTGGTCATCACTGGCGAATTCCCATCCGGTGGATGAACCATGGCACTTGGCCGAGAAACTGGCAGTCATACACTATTGTCAGTGTTCAGTATCCTGTATGGCAGAATCGGACTCTGGGAGAGGTGCCACTGGCCGCTGACCCTGCAGAGCGCATCTTGTATATGGGCCGTTATCTCGTCTTCAGTCCTAAGCCCAGCAGATCGTCATGCACATCATGCAATGCTGCTCGTCTGTTTCTTGGCATGTCTAAACTCTCAGAAAGGGGCCACCCCCACCTTTCCCCCCTCTTTACAGTCCTAGCGACCAGTGTGAGTGTGTGTTTGTGTATGCCTCTGCTGTTCTCTGCTTTTCTGCCAGTAGGTCCATTTTATCCCCCATCAGAGAGGCTGATTGTGAAAAAGAGGGGGGCTTTAAAGTGTAAACCACATGAAAAAACAAAGGGCTTAGGCAAATCAGATAGCTTCAACAACAACAAACACACATCCACTAATCTGCTTAGGGAAATTAATGAACAGGAGAAGAGAACACCCCAACATCCGCATCTCTCGCTCCTGCAAATGGATGGAGGGAGGGATGGAAGGATAACGATCCCGCGACCGCCGGGAGGAGTTAGAGCAGTGGATCAGGCGGAAGACATATGGGCAGGGAGAGAGCCCTCTGCCAGACTGCATCCTCTGAGCCTGTCAGCTAGTATCTCAGCCCAGCCTAATCCCTGCTTTAATTTACTCCAGTCCACCAGGCAAGCAGCAACCAACACCGGCCTCTGGGGTGCCTTCACTTCAGCCGCCGGTGACAAGGAATATGTAAAGGCCCAATTTCTCATCCGGCAGGGTGACACGACGCAGTTCCGCCTGGGAACGCACCCCCAGAATCGTGCCATCTCTTACAGTCAGTCATCTAGTCGCCAGGCCCTCGCTGAGCGCTCTACAGAGGACTTTTTATTAACATGTTGATCGGAGGAGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU150173 lncRNA upstream 1427 8942854 ~ 8943099 (+) True G132043
TU150171 lncRNA upstream 3287 8940475 ~ 8941239 (+) True G132041
TU150093 lncRNA upstream 56151 8887122 ~ 8888375 (+) True G131963
TU150085 lncRNA upstream 80130 8862513 ~ 8864396 (+) True G131960
TU150144 lncRNA upstream 95084 8849237 ~ 8849442 (+) True G132014
TU150363 lncRNA downstream 21158 8969151 ~ 8969490 (+) True G132219
TU150419 lncRNA downstream 63521 9011514 ~ 9058423 (+) True G132275
TU150437 lncRNA downstream 110815 9058808 ~ 9059309 (+) True G132289
TU150455 lncRNA downstream 144072 9092065 ~ 9092387 (+) True G132302
TU150459 lncRNA downstream 152656 9100649 ~ 9100890 (+) True G132306
CI01000026_08474877_08483134.mRNA mRNA upstream 461258 8474877 ~ 8483268 (+) True CI01000026_08474877_08483134
CI01000026_08454661_08461606.mRNA mRNA upstream 482605 8454661 ~ 8461921 (+) True CI01000026_08454661_08461606
CI01000026_08447474_08449558.mRNA mRNA upstream 493915 8447396 ~ 8450611 (+) True CI01000026_08447474_08449558
CI01000026_08421799_08434134.mRNA mRNA upstream 510333 8421683 ~ 8434193 (+) True CI01000026_08421799_08434134
CI01000026_08313929_08318869.mRNA mRNA upstream 625635 8311795 ~ 8318891 (+) True CI01000026_08313929_08318869
CI01000026_08950735_08960908.mRNA mRNA downstream 2670 8950663 ~ 8961146 (+) True CI01000026_08950735_08960908
CI01000026_09076625_09079154.mRNA mRNA downstream 127223 9075216 ~ 9079338 (+) True CI01000026_09076625_09079154
CI01000026_09175446_09178464.mRNA mRNA downstream 227256 9175249 ~ 9178488 (+) True CI01000026_09175446_09178464
CI01000026_09339450_09352303.mRNA mRNA downstream 391457 9339450 ~ 9353177 (+) True CI01000026_09339450_09352303
CI01000026_09365911_09428712.mRNA mRNA downstream 416914 9364907 ~ 9429076 (+) True CI01000026_09365911_09428712
TU149067 other upstream 437739 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 645112 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 755453 8188374 ~ 8189073 (+) True G130967
TU148442 other upstream 1847874 7095053 ~ 7096652 (+) True G130552
TU146291 other upstream 2617741 6326196 ~ 6326785 (+) False G128757
TU150881 other downstream 620746 9568739 ~ 9569160 (+) False G132667
TU151441 other downstream 1211826 10159819 ~ 10161961 (+) True G133192
TU151694 other downstream 2122775 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 2296940 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 2528124 11476117 ~ 11476907 (+) False G133542

Expression Profile