RNA id: CI01000026_10315650_10317985.mRNA



Basic Information


Item Value
RNA id CI01000026_10315650_10317985.mRNA
length 879
RNA type mRNA
GC content 0.44
exon number 3
gene id CI01000026_10315650_10317985
representative False

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10315079 ~ 10317990 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATATAAACTAAGTTTGAAGTACACAGAAATGAGCAGTCTGTTCTTGGACTGAATAGCGTCTTTATGCACTTATGTAATGACTGGACAGCTTGAACAGCACAGACTAGGGGGAAAAAAAGACTTATGGTTTGGGGTTGGGGTGGGGGGGTGGTCACAGGCTGATACCAGTTCAGCTAAAGATGACCTTGTGAGCAGGTGAGGTCTATATGACCCTGAAGGCACACACTACCTTATCTGTGAACTTTGCACAGGAGGGGAGTTTATGGAAAAGTGAAGAAGCAGAAAAAAAGAGACAATAAATGAGAGAATGAATGAGTGTTTGCATGAATGAGAAGGAGAGGAATGTGATATGAATAATAGCATAATAGTTGCATGTGAAAGTATTGTCTGGACTATGCTGATCTTCAAAGGGGAAGCCACTGGTTTGGGTGGTTATATGAACTTATGTTGAGTTTGTTCATCATTAGTGATGTTTGCTCTGAAGGCGGTCCAGTAATAGGAATTAAAGGGTTGTTTGAAACATCCTGGAGCAGGAGGAAAGTGTCTATATGCTGGGTTGAACTCACACAATGGACACAGTGACTGAGGCTCACCTTCACCCAAACACCTGCGTAAAAAACATGAAACCACATCCTAGAGACAGAAGACAGGGGGCCTCCAGGATTTGCGTGACAGCTGCTTGGCTACCATACTCGTGCCCTTTAGTGGCCCTCTTGAAAAACAAGATCTCTGACGGCATAATAAGATCCTTCCTTGCCATGTTGCTTGTAAATACAGTCTGCCTCTCAACGCAGTGTCCCAGACAGCGGAAAATAGGAGATCTGAAACAGGAACAGAGTTACACAAGATACACGCACACATCCATCTTGTAGCTCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151578 lncRNA upstream 590 10314285 ~ 10314489 (+) True G133316
TU151575 lncRNA upstream 5986 10308869 ~ 10309093 (+) True G133313
TU151574 lncRNA upstream 6853 10308015 ~ 10308226 (+) True G133312
TU151572 lncRNA upstream 8472 10306390 ~ 10306607 (+) True G133310
TU151565 lncRNA upstream 15695 10299176 ~ 10299384 (+) True G133303
TU151581 lncRNA downstream 504 10318494 ~ 10318772 (+) True G133319
TU151582 lncRNA downstream 2650 10320640 ~ 10320918 (+) True G133320
TU151585 lncRNA downstream 8667 10326657 ~ 10326856 (+) True G133323
TU151586 lncRNA downstream 9878 10327868 ~ 10328095 (+) True G133324
TU151588 lncRNA downstream 14604 10332594 ~ 10332801 (+) True G133326
CI01000026_10265012_10268157.mRNA mRNA upstream 46531 10264945 ~ 10268548 (+) True CI01000026_10265012_10268157
CI01000026_10200749_10202405.mRNA mRNA upstream 112565 10198593 ~ 10202514 (+) True CI01000026_10200749_10202405
CI01000026_10136110_10149386.mRNA mRNA upstream 165613 10135996 ~ 10149466 (+) True CI01000026_10136110_10149386
CI01000026_10124232_10124468.mRNA mRNA upstream 189244 10123916 ~ 10125835 (+) True CI01000026_10124232_10124468
CI01000026_09915483_09917692.mRNA mRNA upstream 397160 9915445 ~ 9917919 (+) True CI01000026_09915483_09917692
CI01000026_10351923_10354175.mRNA mRNA downstream 33413 10351403 ~ 10356695 (+) False CI01000026_10351923_10354175
CI01000026_10453245_10454111.mRNA mRNA downstream 135135 10453125 ~ 10454176 (+) True CI01000026_10453245_10454111
CI01000026_10455059_10456945.mRNA mRNA downstream 137069 10455059 ~ 10457563 (+) True CI01000026_10455059_10456945
CI01000026_10458602_10465979.mRNA mRNA downstream 140612 10458602 ~ 10466513 (+) True CI01000026_10458602_10465979
CI01000026_10468478_10482863.mRNA mRNA downstream 150488 10468478 ~ 10482955 (+) True CI01000026_10468478_10482863
TU151441 other upstream 153118 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 745919 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 1808292 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 2015665 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 2126006 8188374 ~ 8189073 (+) True G130967
TU151694 other downstream 752778 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 926943 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 1158127 11476117 ~ 11476907 (+) False G133542

Expression Profile