RNA id: TU151513


Basic Information

Item Value
RNA id TU151513
length 659
lncRNA type sense_over
GC content 0.35
exon number 1
gene id CI01000026_10351923_10354175
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10351403 ~ 10356695 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTGGTACGACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAACGTATTATGCTTTCTTTCCCTCCTGTTCCTGGAATGTGTACTGTCCGCAGTGTTTAACTTGTGTGTCTTCTGTTTGTACACTCAAATTTATTTTCTTTTTCACTCATCTTGTATCTCGTGCCGAATGTTATGACATAATGGCCATAGCAACCACAGAAAGTCCAACCCACACTCTGATTTGATGTGCTGGAGATAACTTTTATTACTGCCTTTCAATTGTAAAGCAGCATGTTTCAGTGTCTTGAAACTTTGCAATAACTCAGAGGACTGTGAAAGCTTCTCGGTAGACAATTTTAAAATCCGGCCAAAGCTGGTCACAAAGGTTTGACAGTAAATAAGAGTAAATATGTTCAGTCACTCCACTCTATTGTCTGAAGATAGGATTCTAGGAAGCTAATAGACATTCCCAGGTGAAAAAAAAAAAAAGTACATTTCTATAATGTACTTAAAGTGCTCTATTTTCGTGCACTAATTTTGTACTTAATATACTAAAAATTCTTCTTTAGCACTTCTTAAGATAATCTTAAGAACATCTAAGTGTACTCAACAGTGCTATTTTGAGACACCATGAAATATGAACTAAAATGTGC

Function

GO:

id name namespace
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10049 CEBPG; CCAAT/enhancer binding protein (C/EBP), gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151592 lncRNA upstream 10753 10343711 ~ 10344066 (+) True G133330
TU151591 lncRNA upstream 11143 10343306 ~ 10343676 (+) True G133329
TU151588 lncRNA upstream 22018 10332594 ~ 10332801 (+) True G133326
TU151586 lncRNA upstream 26724 10327868 ~ 10328095 (+) True G133324
TU151585 lncRNA upstream 27963 10326657 ~ 10326856 (+) True G133323
TU151598 lncRNA downstream 17921 10373398 ~ 10373955 (+) True G133336
TU151600 lncRNA downstream 25777 10381254 ~ 10381549 (+) True G133338
TU151601 lncRNA downstream 26077 10381554 ~ 10381758 (+) True G133339
TU151606 lncRNA downstream 31565 10387042 ~ 10387244 (+) True G133344
TU151635 lncRNA downstream 159943 10515420 ~ 10515648 (+) True G133373
CI01000026_10315650_10317985.mRNA mRNA upstream 36829 10315079 ~ 10317990 (+) False CI01000026_10315650_10317985
CI01000026_10265012_10268157.mRNA mRNA upstream 86271 10264945 ~ 10268548 (+) True CI01000026_10265012_10268157
CI01000026_10200749_10202405.mRNA mRNA upstream 152305 10198593 ~ 10202514 (+) True CI01000026_10200749_10202405
CI01000026_10136110_10149386.mRNA mRNA upstream 205353 10135996 ~ 10149466 (+) True CI01000026_10136110_10149386
CI01000026_10124232_10124468.mRNA mRNA upstream 228984 10123916 ~ 10125835 (+) True CI01000026_10124232_10124468
CI01000026_10453245_10454111.mRNA mRNA downstream 97648 10453125 ~ 10454176 (+) True CI01000026_10453245_10454111
CI01000026_10455059_10456945.mRNA mRNA downstream 99582 10455059 ~ 10457563 (+) True CI01000026_10455059_10456945
CI01000026_10458602_10465979.mRNA mRNA downstream 103125 10458602 ~ 10466513 (+) True CI01000026_10458602_10465979
CI01000026_10468478_10482863.mRNA mRNA downstream 113001 10468478 ~ 10482955 (+) True CI01000026_10468478_10482863
CI01000026_10521984_10543018.mRNA mRNA downstream 166507 10521984 ~ 10543108 (+) True CI01000026_10521984_10543018
TU151441 other upstream 192858 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 785659 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 1848032 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 2055405 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 2165746 8188374 ~ 8189073 (+) True G130967
TU151694 other downstream 715291 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 889456 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 1120640 11476117 ~ 11476907 (+) False G133542

Expression Profile