RNA id: TU151777



Basic Information


Item Value
RNA id TU151777
length 4151
RNA type TUCP
GC content 0.39
exon number 4
gene id G133497
representative True

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11244933 ~ 11255073 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAATGGGAGAGCACGGGTAGCACCAAAAATGAAGAGAACCGCTGCCCAGCCAACTATATTAAACTGCTGGTCAAAGAGGGACGTTAAAAAGAATAAAGCATGTACTGAGAAGGAGATTGCTCTGAAACTTGCTCGAAAACCGGAACCATGGAATATATCAACATTCCTGATCATCCCAAACCCGTTCCCCTGGAAATCGGACTGACAGTCCTTGCCAATAAGGGCCCCAGCACACCCCACATCATTAAGTTGCTGGACTGGCAGGACCTCCCCAACCATTATATCGCCCTGTGTCAATCTCTTTGAATTTTTGAAAAGCTGTGGGGGCATCTTCAAAGAAGAGATTGCACGCCATGTGATGCGGCAGGTGGTTGAGGCTGCAAACAGCTGCTGCAGCCGAGGTGTTTTCCACAGAGACATAAAAGAGGAAAACATATTAGTGAACACGGACACACTGGACGTGACGCTCATTGATTTTGGCTGCAGGGACCTGCTGTATGAAACGGCTTACCACACCTTTACTGGCACATTGCAGTACTGCCCCCCCGAATATTTCAAGACGGGCAAGTACTACGGGCGACCAGCAACCGTGTTTTCACTGGGNNNNNNNNNNNNNNCAATGGTGTGCAGGCAGATCAAAACACTGTTGAATATCAAATGTCAAGTGTCCCCAACTAAGCAAGCCAAAGGCGACAGCGGCAAGGAACCCAAACTCCAACAGGTGACATCAGGTGGCAAACAGGTGTTAAAATGGAGAAAAAATCCTTGGGAGAAACCAGGCTCAGTCAGGGGGGCCAACAGCGAACAGTGCTTTATGATAGCTGCCTGAATCATAATAATGATCTGATACAAGCAAGCTGTCGTCATTTTTCGCGCTTGATCAAAAGGATCAGGAGAACAGTTCAAGCGCATCTTTTGACGTTCGTTAAAAAGAAGAGAACAGAAGGTATGATATTATTAGTGTTTTACGAACATTCCCCTGACACATTAGAACGAATAACGAACATAGCTAAAGTGCATTGATGCCGTAAGGGTTCGTTGTCAAGGTGAATTATTGACAGTTAATGTCATCACAGAGTTGATAATGCACACATGCATATAGGCTATGTTAGCTACGTATGATTATTTATTTTATGTAATAAAAATATATGGGCTCTGTTCATACTCCACTGTTTAAAACCGCATGAACCATCCATTCAAGACACAGCTAACAAAGAGCGTTTTATTGCAATATAAGACCACACTGTATTACAGAAATTAGTTAGAAGATTGATTTAAAAAAAAAAAAAAAAACTATTGTACTATTGTTCCCAGCATGCATTGCACCATGACACTTTTAAATGTCACCTTTGTTGAGATACAAGTGCATTACATAAAAAAAAAAACACTCAGTGTAAGACAGTGTTAATTTTGGCAGCCATTTTTGATTTAGTCTTAAGTTGCTTCCCAAATGACTCACTATGCACTATGCGCTTATACACTATGTACTTATGCACTATGGACTTATCCATGTAGTGCGTGAATTGTATAAGGTTATTTTGTCATTTAACAACGGAGTCTGATACCCTCTTCCCCTCCGCTACGTAATTAAAGCTGTGACAGTTGAGTGCATGAAGTGTCCAACATTACACACTTTGTTTTTCTGTTAATTTAGTGCATGTATTTAAAGTGTACTTTTTCTTTTTGGAATTTTCAGTGTGAACACACTACTTGCACTATTTATACTTAAAAACATCATAGAATAGTGCATAAGTACTCAAATTGGGATGCACCTTTAGTCTATCTTCAGACGAAAATGCTCTTTAGTCTTAGACACATTTGTCTCATATTTTAGTCTAGTCTATTAAAACCGCCAGTAGGTGGCGATAAGTCACTGTTTTTATGAATGAATCATCAAGTCATTCATTCTTTCAGTATTAAAGCAAGCGGCTGTATTTATGAAGTGAATGGAGTGACCATCAGACTCTCTCTCTCTCTCAGACACACACAATCCATCCCTTTATATAGGCTACCTAAAATGATGCCTTTGGAGGGCACTGAAGTGTTTAATCGTTATCACCATATATTTTTAATAAAAATAACTATATAAATGATTTCCAAATGACACTTCCCAGATAGCAACTTTGTGCCGACCCAAATCCGGCCCACATCTGCCACACGTGGTGTGATGATCTGGGCGACATGTGGCGTGGAATGATGGCACTTGGGCGGACCGCTCCTGTTTGCCAGATCTGAGGCACAATCAGGCCATAGCAATACCACATGTCAGCCAAGAGCAAAGAAATAAACCAGAACTGGACCTTATCTGAGCCACAGAATCTTTCTATATTATTTATAGAATCATCTTTGCATTAACAAGCCAGTTAACAAGTAGAATCACTGAAGAAAAGAAGAAAACAGAAAAAAGAAACAAACAGAAACACAAGAGCTACAACTGACTTCAGCCACAGCCTTAGATGAAATCAACTGAAGATAAAAGAAGACATTAAATCTCTCCAGATCTCAGCAGAGGAGGATTAAACAACTCCACAAACAGCATTACAGCTTCACATATTACTAACCAGATTTACTTTATTTCTGTCATTCATATACAGAAGCTCTTACTGAGAATTAACAGGAGTTTATGTTTGTTTCATTTGAAGTCACCATAATGGTGATTGGTGCTTCCATTAGTTGGGCTCTTAGCTCTTATATGTTTGTCTTATCTGGTTGTTGTGACAGCATGTCTTTTAAACACTTGCAGTAGCAAAAAAGCTGAAGTGTGGTCAGATGATGGTTTTATAGTTAGTGTGAAACAGCCTGAACTGTTGAGATCATCTCAGTATAATAGTTTTGTTTTGCCTTTAATTCCTTCAAATTGTAACTCTGTTTTACTGGAACATGAGATCACACTATATTGCAGAAATCAGTGATTGAAAGAAAACAGTAAATGACAATGACAAACAGAGATTAGAGCATTTAGCGTATGAATCTCAACAATGGTGATAACTAAATATTCAGACAATCAGATCAACTCTGAACATCACAAAAAGCTACTAAAAGACAGAACAAAAACCACAGCAAAAAATAAAAGCAAATAGTTAGAATTAAAGAAAATAATCGGACAATTCAGCTGCATAATTTATTCATGCTGTGATGCATGCTGGGAGTTTTGTACTATTGTTCCCAGCATGCATTGCGGCATGACACTTTTGATTGTCACCATTGTTGAGATTCATGTGCTGATTCTTGATGTCTTTGTGTGTCATCTTAGTGTCATTATTGTGTTTTTTTTTTTTGTTTAATTAAAGCATGATCTACTGTTGTAGTAATAGGCTTTGTAATATAAATGCATATATCGTAAAGAAAATTTTTTGTTTGTTTAGTGTTTTCTGTCCGAAAATGTTGGGGTGCTCAAATGCTCATTTATAAAAGCAGTCTTTGATGCCGTTATCATGTCAAAAGCAAGAGTTGTAAATATTGAGGATGCTCTGTCTAGACTGGGAGCAGTAAAATAACAGTAATGACACCACACAATAGAGAATTTTTGGACAAAAAATCATTTGCGACAAACCTCGATTTGGGCCACAACCCCACCCCCCACCGGATCGTTCAGGAGTGCAAATCTTTAAGTGTGCAGCCAGCCTATGGTGGACAGGCACGCACGAGGTGAGTGCTCTGTAAAAGAATGCGTATATGCGCAGACACATAATCTTTCGTTACAAAGTGACATTGCCAACTACTTGTCTGGCATGTGTAATACAGCATTTTTAGTCGTTTGCGTGGATCCATGTGAATGGGGATTTTTGATAATGTTGTCATCTCTACAAAGATGTACATCGTTGTTCGGGGGTGTGGACCTTTAGTGTTAGTTTTTCTCTTGCTGCTGAAATTGTTAGCTGTGGCAAAAACAGCAAGGGAAAATGTGGTCAGGTGATGTTGACAACTTGATGATGAAGAGGTTGTAATCATCTAGTGGTCTAAACTTACACAGAGTGATTTTTTTTATGAAATGCAGTTAATTTCAACAATAATAGTCTATTATAGAATGCATTGGCATGAAGCATGTCACCATTGTTGAGATTTATATTTCTACGTAAGAGGGTCTATGGTTAGAAACCTGTTTAAGAAGCCTTGCAGCGGTCAACCTGAAGCTTTCACCTGCACACCCACTGAAGCTAAACAGGGTTGAGCCCGGTCTGTATCTGGATTGGAGACCTCCTGAGAGACTGGGTAGCTGCGGGAAGAGGTCTGATCAACCTGTAGCCTGAGTGGGTCCTAATGCCCCAGTACAGTTGCAATAAGCTGTACTGTGTAAAGGGTGTCACCCTGGTGTAAAGGAGCCCATACAGCACATCACATACTGCCCAAAGCCCCAGTACAGTCGCCATAAACTGTACTGAATAAAGGGTGTAACCCTGGGGCAAAAATAATCCCTACATTATATTGCCTTAGTTAGTTTCACATCACAAATGATATACTATTTTAATTAGTTCTTACAACTTACATGGAAGCACTCTATTTTCTTTTTCATTACTATTTTTAATGTTTTTGAAAGAAGTCTCATATGCTCATCAAGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151771 lncRNA upstream 51108 11193361 ~ 11193825 (+) True G133491
TU151725 lncRNA upstream 91536 11144309 ~ 11153397 (+) True G133454
TU151709 lncRNA upstream 124183 11120509 ~ 11120750 (+) True G133444
TU151708 lncRNA upstream 125056 11119648 ~ 11119877 (+) True G133443
TU151707 lncRNA upstream 125911 11118711 ~ 11119022 (+) True G133442
TU151781 lncRNA downstream 936 11256009 ~ 11256267 (+) True G133501
TU151796 lncRNA downstream 65792 11320865 ~ 11321130 (+) True G133514
TU151797 lncRNA downstream 66182 11321255 ~ 11321553 (+) True G133515
TU151799 lncRNA downstream 66731 11321804 ~ 11324137 (+) False G133516
TU151798 lncRNA downstream 68282 11323355 ~ 11324137 (+) True G133516
CI01000026_11239339_11240254.mRNA mRNA upstream 4500 11239339 ~ 11240433 (+) True CI01000026_11239339_11240254
CI01000026_11203781_11212074.mRNA mRNA upstream 32351 11203781 ~ 11212582 (+) True CI01000026_11203781_11212074
CI01000026_11075931_11078249.mRNA mRNA upstream 166477 11075784 ~ 11078456 (+) False CI01000026_11075931_11078249
CI01000026_11032284_11063044.mRNA mRNA upstream 181308 11031679 ~ 11063625 (+) True CI01000026_11032284_11063044
CI01000026_11012960_11021926.mRNA mRNA upstream 223007 11011340 ~ 11021926 (+) True CI01000026_11012960_11021926
CI01000026_11262923_11264188.mRNA mRNA downstream 6008 11261081 ~ 11264534 (+) True CI01000026_11262923_11264188
CI01000026_11266022_11278889.mRNA mRNA downstream 10949 11266022 ~ 11278899 (+) True CI01000026_11266022_11278889
CI01000026_11298219_11305000.mRNA mRNA downstream 43146 11298219 ~ 11305013 (+) True CI01000026_11298219_11305000
CI01000026_11403059_11415298.mRNA mRNA downstream 147986 11403059 ~ 11415512 (+) True CI01000026_11403059_11415298
CI01000026_11436071_11446054.mRNA mRNA downstream 180428 11435501 ~ 11446322 (+) True CI01000026_11436071_11446054
TU151694 other upstream 165853 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 1082972 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 1675773 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 2738146 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 2945519 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU151829 other downstream 221044 11476117 ~ 11476907 (+) False G133542

Expression Profile