RNA id: CI01000026_15189520_15194928.mRNA


Basic Information

Item Value
RNA id CI01000026_15189520_15194928.mRNA
length 1409
RNA type mRNA
GC content 0.42
exon number 6
gene id CI01000026_15189520_15194928
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 15189321 ~ 15194971 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAATTAATGACGAATCGTTCGTCGTTATGTTCGATGATAGCATGAACAGGACAACAAAAAACAAACAACTAGACCTTCATGTCAGATGCTGGACAACGGATGAAACGGGAACGAGGGTACAAAAGAACTCTGCCTCAGCAAGATGCTCTCTGTGTCAGTGGATAGGCCAAGTGTTACAGCAACAATACAGTGAACAGTTTGGTGGAGCTCAGATTCAGATTGTGGGAAGCTGCGGTCTTCACATAATACACAACTCTATCAAGACTGGTTTTGGAGTGTGGCAAATAGAGAAGCTTCTGAAGGCCCTGCACTTCCTTTTCCACTGTGCTCCCGCAAGGCAGCAAGACTACAGTTTGACTTGGAAGATCTTGTCAGGGGAACATCAGGGAGTCAAAGCAGATTTAGGCGAGCTTAGTCAGCTGCAGTTCATGAAAGACTGTGGGATTGCTCTTGCAAACATCTGCAAGAAGATTCTGGATAAATGTCCACTGAAGTACTACTTGGTTCAAAACATGACATGTCTGGACCCAAATAAAATGTACTCTGAGCCAGATGTGTGCTTGCAGAAAATAAAGGGCCTCATCCAGAAGTTTGTACAGGATAAGCAGTTGTCAAGTCTAACACTTGGTGATGTGATTGCACAGAAGTTTGAGACATTCCTCTTCAGTGAGGCCAGAGCAGCAAGCTTCAAGGACTTCAGTCCCACAGAACCAAACTCTAGAGTCGACATGTTTTTGCATCAGCATATGAGCACCTCATCACCTGAGTTGTGGGGTTTTGTGAAAAAGCTGCTGATTCTCTCCCATGGCCATGCAACAGTTGAACGTGGGTTCTCAGTCAACAAAGAGGTGCCTCTTACAAAAGAGTTACTAAACTACTGTGCAACTGCATGGACCAGGTACAGAATGTACCTAGATGAGGAAAAAAGGAAAAAGACAAAGGATGAGCAGATGACTAAAAGAAAAATGGCTGAAGATGAACTTGCAGTTCTATGGAAGAAAAGAAGAACCATCCACAGTGTGTGCGAGACCCTAGAAAAAGATGCAGACAGCTTTGCAGAGAAAGCTGAGAGTATGACAGGGACAAAGATGGCAGAACTGATTACGAAGTCAAACACGTTGAGAAGACGCTACAAGGAGAAGAGAGACGAGCTAGATGAATTGGATAATGAGATTGAGAGAAAGGCTTCTGAGCTACGAGAAATATAATGCTGAGATGTATTATTAATTTGATTTAATTAAAATTGTTACACATGTTAAAACTGATTACAAAGTCACTAAGAAGATGATACAAGGAGTAGAGAGATAAGTTAGATAAGTTTGATAAAGAAATCGAGAGAAAGGCTTCTAAGCTACAAAAATATACTGAGATGTATCGGTTTTGATGTTACTGATTTTGTTGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154979 lncRNA downstream 111482 15076811 ~ 15077839 (-) True G136377
TU154946 lncRNA downstream 129147 15059950 ~ 15060174 (-) True G136344
TU154815 lncRNA downstream 337221 14851767 ~ 14852100 (-) True G136214
TU154766 lncRNA downstream 522744 14666345 ~ 14666577 (-) True G136170
TU154752 lncRNA downstream 551341 14637520 ~ 14637980 (-) True G136156
TU155222 lncRNA upstream 148239 15343210 ~ 15343413 (-) True G136609
TU155488 lncRNA upstream 212541 15407512 ~ 15407792 (-) True G136845
TU155489 lncRNA upstream 215037 15410008 ~ 15410383 (-) True G136846
TU155506 lncRNA upstream 241773 15436744 ~ 15437063 (-) True G136860
TU155511 lncRNA upstream 279533 15474504 ~ 15474708 (-) True G136865
CI01000026_15050306_15051326.mRNA mRNA downstream 136035 15049040 ~ 15053286 (-) True CI01000026_15050306_15051326
CI01000026_14914431_14918358.mRNA mRNA downstream 270126 14913882 ~ 14919195 (-) True CI01000026_14914431_14918358
CI01000026_14904913_14906047.mRNA mRNA downstream 283227 14904746 ~ 14906094 (-) True CI01000026_14904913_14906047
CI01000026_14867079_14869821.mRNA mRNA downstream 318002 14866594 ~ 14871319 (-) True CI01000026_14867079_14869821
CI01000026_14862414_14863954.mRNA mRNA downstream 325327 14861789 ~ 14863994 (-) True CI01000026_14862414_14863954
CI01000026_15217144_15334733.mRNA mRNA upstream 21975 15216946 ~ 15335175 (-) True CI01000026_15217144_15334733
CI01000026_15410940_15426472.mRNA mRNA upstream 215829 15410800 ~ 15426472 (-) True CI01000026_15410940_15426472
CI01000026_15444272_15445552.mRNA mRNA upstream 249081 15444052 ~ 15445552 (-) True CI01000026_15444272_15445552
CI01000026_15457228_15461956.mRNA mRNA upstream 262227 15457198 ~ 15461956 (-) True CI01000026_15457228_15461956
CI01000026_15604078_15614242.mRNA mRNA upstream 408993 15603964 ~ 15614655 (-) True CI01000026_15604078_15614242
TU154700 other downstream 633885 14554917 ~ 14555436 (-) True G136110
TU152172 other downstream 3882140 11301915 ~ 11307181 (-) True G133802
TU152150 other downstream 4351716 10834015 ~ 10837605 (-) False G133790
TU152144 other downstream 4399167 10790055 ~ 10790154 (-) True G133789
TU156370 other upstream 1561758 16756729 ~ 16758327 (-) False CI01000026_16756776_16760261
TU156388 other upstream 1611393 16806364 ~ 16808372 (-) True G137667
TU156657 other upstream 1788280 16983251 ~ 16984352 (-) True G137914
TU156715 other upstream 1873377 17068348 ~ 17069433 (-) True G137967

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU61997 True 1057 lncRNA 0.39 1 NC_047597.1 25362988 ~ 25364044 (-)