Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU156377 |
| length | 2412 |
| lncRNA type | sense_over |
| GC content | 0.40 |
| exon number | 4 |
| gene id | G137664 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000026 |
| NCBI id | null |
| chromosome length | 17172400 |
| location | 16640737 ~ 16712136 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU156475 | lncRNA | downstream | 6329 | 16634181 ~ 16634408 (-) | True | G137751 |
| TU156463 | lncRNA | downstream | 15609 | 16624848 ~ 16625128 (-) | True | G137739 |
| TU156447 | lncRNA | downstream | 32037 | 16608495 ~ 16608700 (-) | True | G137723 |
| TU156439 | lncRNA | downstream | 42235 | 16598264 ~ 16598502 (-) | True | G137715 |
| TU156406 | lncRNA | downstream | 294396 | 16337879 ~ 16346341 (-) | True | G137682 |
| TU156384 | lncRNA | upstream | 11314 | 16723450 ~ 16724112 (-) | True | G137666 |
| TU156385 | lncRNA | upstream | 24041 | 16736177 ~ 16736221 (-) | True | G137666 |
| TU156380 | lncRNA | upstream | 47418 | 16759554 ~ 16761341 (-) | True | CI01000026_16756776_16760261 |
| TU156379 | lncRNA | upstream | 48760 | 16760896 ~ 16761341 (-) | True | G137665 |
| TU156402 | lncRNA | upstream | 71268 | 16783404 ~ 16784247 (-) | True | G137678 |
| CI01000026_16553812_16554906.mRNA | mRNA | downstream | 84854 | 16553382 ~ 16555883 (-) | True | CI01000026_16553812_16554906 |
| CI01000026_16432592_16456842.mRNA | mRNA | downstream | 183895 | 16432527 ~ 16456842 (-) | True | CI01000026_16432592_16456842 |
| CI01000026_16297047_16419596.mRNA | mRNA | downstream | 220998 | 16296642 ~ 16419739 (-) | True | CI01000026_16297047_16419596 |
| CI01000026_15930136_15933539.mRNA | mRNA | downstream | 707198 | 15929803 ~ 15933539 (-) | True | CI01000026_15930136_15933539 |
| CI01000026_15780006_15782114.mRNA | mRNA | downstream | 858462 | 15779650 ~ 15782275 (-) | True | CI01000026_15780006_15782114 |
| CI01000026_16739750_16751270.mRNA | mRNA | upstream | 27112 | 16739248 ~ 16751270 (-) | False | CI01000026_16739750_16751270 |
| CI01000026_16756776_16760261.mRNA | mRNA | upstream | 44640 | 16756776 ~ 16760261 (-) | False | CI01000026_16756776_16760261 |
| CI01000026_16817010_16832208.mRNA | mRNA | upstream | 104159 | 16816295 ~ 16832208 (-) | True | CI01000026_16817010_16832208 |
| CI01000026_16959659_16962519.mRNA | mRNA | upstream | 247137 | 16959273 ~ 16963221 (-) | True | CI01000026_16959659_16962519 |
| CI01000026_16988458_16994714.mRNA | mRNA | upstream | 275680 | 16987816 ~ 16995104 (-) | True | CI01000026_16988458_16994714 |
| TU154700 | other | downstream | 2085301 | 14554917 ~ 14555436 (-) | True | G136110 |
| TU152172 | other | downstream | 5333556 | 11301915 ~ 11307181 (-) | True | G133802 |
| TU152150 | other | downstream | 5803132 | 10834015 ~ 10837605 (-) | False | G133790 |
| TU152144 | other | downstream | 5850583 | 10790055 ~ 10790154 (-) | True | G133789 |
| TU156370 | other | upstream | 44593 | 16756729 ~ 16758327 (-) | False | CI01000026_16756776_16760261 |
| TU156388 | other | upstream | 94228 | 16806364 ~ 16808372 (-) | True | G137667 |
| TU156657 | other | upstream | 271115 | 16983251 ~ 16984352 (-) | True | G137914 |
| TU156715 | other | upstream | 356212 | 17068348 ~ 17069433 (-) | True | G137967 |
