RNA id: TU146290


Basic Information

Item Value
RNA id TU146290
length 508
RNA type TUCP
GC content 0.45
exon number 1
gene id G128757
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 6326196 ~ 6326785 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGCCTGTCCGCCTTACCGAGCGTTTTCCCATTGCTATTATTTTGCCTTATTGTGTATGATCATTGCCTGTTTCACCTGTTTACTGCCTTTTGGATTGCCCACTGTTCTGTTGCCTGGATTGGACTGCCTTATTGTGTTTGTACCTCTGCCTGCCTCACGTTTACGATTATTTGCCTGCTGTTTTGGATTTGTTTGCTGTGGATACATTAAACACTGCACATGGATTCTAATGCCGCCTCAGCGTCCTTACATAATACTTTGCCACCGAAGAATCCAGCAGATGTTATGAATCTACAGGCCGCGTTCGCTTATCAGAGCGACGTTCTCAAGGAGTACCGTGATCAACTGGCTAAAGCTCAAGTGGCTAATGACTACCTCACTCAGTATTTGCGATCGCTACCACCGCCTATGCCCAGAAAGGTAAGATTTGCATTACCTGACAAGTTTAATGGTTCTGCTGAGCAATGTAAAGGTTTCATCCGCCAAGTAGAAATCTTTTTCATGCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146236 lncRNA upstream 126752 6199224 ~ 6199526 (+) True G128708
TU146133 lncRNA upstream 177423 6147867 ~ 6148855 (+) False G128622
TU146132 lncRNA upstream 177423 6147888 ~ 6148855 (+) True G128622
TU146130 lncRNA upstream 255978 6069209 ~ 6070300 (+) True G128620
TU146170 lncRNA upstream 273953 6051870 ~ 6052325 (+) True G128654
TU148190 lncRNA downstream 78937 6405722 ~ 6406100 (+) True G130330
TU148203 lncRNA downstream 93070 6419855 ~ 6420099 (+) True G130343
TU148217 lncRNA downstream 109562 6436347 ~ 6436657 (+) True G130357
TU148252 lncRNA downstream 154962 6481747 ~ 6482158 (+) True G130390
TU148256 lncRNA downstream 158263 6485048 ~ 6485276 (+) True G130394
CI01000026_06234663_06316874.mRNA mRNA upstream 9404 6234663 ~ 6316874 (+) True CI01000026_06234663_06316874
CI01000026_06174460_06187224.mRNA mRNA upstream 138802 6173889 ~ 6187476 (+) True CI01000026_06174460_06187224
CI01000026_06109467_06140429.mRNA mRNA upstream 184679 6109467 ~ 6141599 (+) True CI01000026_06109467_06140429
CI01000026_05828041_05831860.mRNA mRNA upstream 494269 5828041 ~ 5832009 (+) True CI01000026_05828041_05831860
CI01000026_05820062_05827011.mRNA mRNA upstream 498853 5820062 ~ 5827425 (+) True CI01000026_05820062_05827011
CI01000026_06332081_06337355.mRNA mRNA downstream 4954 6331739 ~ 6337396 (+) True CI01000026_06332081_06337355
CI01000026_06385815_06391975.mRNA mRNA downstream 59030 6385815 ~ 6392502 (+) True CI01000026_06385815_06391975
CI01000026_06422488_06426925.mRNA mRNA downstream 95628 6422413 ~ 6427191 (+) True CI01000026_06422488_06426925
CI01000026_06441927_06455849.mRNA mRNA downstream 114729 6441514 ~ 6455922 (+) True CI01000026_06441927_06455849
CI01000026_06503812_06560355.mRNA mRNA downstream 177027 6503812 ~ 6560355 (+) True CI01000026_06503812_06560355
TU146105 other upstream 334517 5983879 ~ 5991761 (+) True G128601
TU146089 other upstream 376156 5949813 ~ 5950122 (+) True G128585
TU145659 other upstream 1769961 4555776 ~ 4556317 (+) True CI01000026_04556074_04556964
TU145596 other upstream 1895077 4430562 ~ 4431201 (+) True G128137
TU145592 other upstream 1994193 4287873 ~ 4318645 (+) True G128133
TU148442 other downstream 768268 7095053 ~ 7096652 (+) True G130552
TU148937 other downstream 1861589 8188374 ~ 8189073 (+) True G130967
TU148972 other downstream 1971788 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU149067 other downstream 2174623 8501408 ~ 8506787 (+) True G131077
TU150881 other downstream 3241954 9568739 ~ 9569160 (+) False G132667

Expression Profile