RNA id: TU149993


Basic Information

Item Value
RNA id TU149993
length 200
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G131873
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8574124 ~ 8574323 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATGTCTGATTGGCAGCTGTGCTCATGCGTGCATCAGATATGTCTGTGATTGGCTACAATGATCAATGCTTCAAAAACATGTTGTAAATAGACATCAGTGAGGCTCTTCACCGAGCGCTTAGACAGATACGCATGGGAGCATAGACGCCTGCTTTCAAACGTTCCCACTCCTGCTTTAAAAAAGCTTTTAAATTCAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149992 lncRNA upstream 283 8573471 ~ 8573841 (+) True G131872
TU149981 lncRNA upstream 1593 8572298 ~ 8572531 (+) True G131861
TU149979 lncRNA upstream 2792 8571102 ~ 8571332 (+) True G131859
TU149101 lncRNA upstream 52682 8520774 ~ 8521442 (+) True G131108
TU149053 lncRNA upstream 76132 8486471 ~ 8497992 (+) False G131071
TU149995 lncRNA downstream 4163 8578486 ~ 8578716 (+) True G131875
TU149997 lncRNA downstream 9411 8583734 ~ 8584115 (+) True G131877
TU149998 lncRNA downstream 10389 8584712 ~ 8584943 (+) True G131878
TU150010 lncRNA downstream 85714 8660037 ~ 8660350 (+) True G131890
TU150039 lncRNA downstream 134156 8708479 ~ 8708689 (+) True G131919
CI01000026_08474877_08483134.mRNA mRNA upstream 90856 8474877 ~ 8483268 (+) True CI01000026_08474877_08483134
CI01000026_08454661_08461606.mRNA mRNA upstream 112203 8454661 ~ 8461921 (+) True CI01000026_08454661_08461606
CI01000026_08447474_08449558.mRNA mRNA upstream 123513 8447396 ~ 8450611 (+) True CI01000026_08447474_08449558
CI01000026_08421799_08434134.mRNA mRNA upstream 139931 8421683 ~ 8434193 (+) True CI01000026_08421799_08434134
CI01000026_08313929_08318869.mRNA mRNA upstream 255233 8311795 ~ 8318891 (+) True CI01000026_08313929_08318869
CI01000026_08944583_08947981.mRNA mRNA downstream 370203 8944526 ~ 8947993 (+) True CI01000026_08944583_08947981
CI01000026_08950735_08960908.mRNA mRNA downstream 376340 8950663 ~ 8961146 (+) True CI01000026_08950735_08960908
CI01000026_09076625_09079154.mRNA mRNA downstream 500893 9075216 ~ 9079338 (+) True CI01000026_09076625_09079154
CI01000026_09175446_09178464.mRNA mRNA downstream 600926 9175249 ~ 9178488 (+) True CI01000026_09175446_09178464
CI01000026_09339450_09352303.mRNA mRNA downstream 765127 9339450 ~ 9353177 (+) True CI01000026_09339450_09352303
TU149067 other upstream 67337 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 274710 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 385051 8188374 ~ 8189073 (+) True G130967
TU148442 other upstream 1477472 7095053 ~ 7096652 (+) True G130552
TU146290 other upstream 2247339 6326278 ~ 6326785 (+) True G128757
TU150881 other downstream 994416 9568739 ~ 9569160 (+) False G132667
TU151441 other downstream 1585496 10159819 ~ 10161961 (+) True G133192
TU151694 other downstream 2496445 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 2670610 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 2901794 11476117 ~ 11476907 (+) False G133542

Expression Profile