RNA id: TU149995


Basic Information

Item Value
RNA id TU149995
length 231
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G131875
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8578486 ~ 8578716 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGAATTATCGGGAGATGATTTACCGCTGTGGAACATTTCTTCTTGTCAGCAGGGTTTTTCATTTTGGCTTTTGCTAAATGTTGAATTAATCTTCTTCGGACAACAACACACTCTCTGTCTCATTTGGCAGATTTAGGTCTTCTCTGGCTGTCGACAGAAAGTATAGATTTTATCAATGCGGTCACATGGATTAATCTTCAGCGATTGGATTACAAGGAGAGAACAAGGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149993 lncRNA upstream 4163 8574124 ~ 8574323 (+) True G131873
TU149992 lncRNA upstream 4645 8573471 ~ 8573841 (+) True G131872
TU149981 lncRNA upstream 5955 8572298 ~ 8572531 (+) True G131861
TU149979 lncRNA upstream 7154 8571102 ~ 8571332 (+) True G131859
TU149101 lncRNA upstream 57044 8520774 ~ 8521442 (+) True G131108
TU149997 lncRNA downstream 5018 8583734 ~ 8584115 (+) True G131877
TU149998 lncRNA downstream 5996 8584712 ~ 8584943 (+) True G131878
TU150010 lncRNA downstream 81321 8660037 ~ 8660350 (+) True G131890
TU150039 lncRNA downstream 129763 8708479 ~ 8708689 (+) True G131919
TU150105 lncRNA downstream 217589 8796305 ~ 8797848 (+) True G131975
CI01000026_08474877_08483134.mRNA mRNA upstream 95218 8474877 ~ 8483268 (+) True CI01000026_08474877_08483134
CI01000026_08454661_08461606.mRNA mRNA upstream 116565 8454661 ~ 8461921 (+) True CI01000026_08454661_08461606
CI01000026_08447474_08449558.mRNA mRNA upstream 127875 8447396 ~ 8450611 (+) True CI01000026_08447474_08449558
CI01000026_08421799_08434134.mRNA mRNA upstream 144293 8421683 ~ 8434193 (+) True CI01000026_08421799_08434134
CI01000026_08313929_08318869.mRNA mRNA upstream 259595 8311795 ~ 8318891 (+) True CI01000026_08313929_08318869
CI01000026_08944583_08947981.mRNA mRNA downstream 365810 8944526 ~ 8947993 (+) True CI01000026_08944583_08947981
CI01000026_08950735_08960908.mRNA mRNA downstream 371947 8950663 ~ 8961146 (+) True CI01000026_08950735_08960908
CI01000026_09076625_09079154.mRNA mRNA downstream 496500 9075216 ~ 9079338 (+) True CI01000026_09076625_09079154
CI01000026_09175446_09178464.mRNA mRNA downstream 596533 9175249 ~ 9178488 (+) True CI01000026_09175446_09178464
CI01000026_09339450_09352303.mRNA mRNA downstream 760734 9339450 ~ 9353177 (+) True CI01000026_09339450_09352303
TU149067 other upstream 71699 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 279072 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 389413 8188374 ~ 8189073 (+) True G130967
TU148442 other upstream 1481834 7095053 ~ 7096652 (+) True G130552
TU146290 other upstream 2251701 6326278 ~ 6326785 (+) True G128757
TU150881 other downstream 990023 9568739 ~ 9569160 (+) False G132667
TU151441 other downstream 1581103 10159819 ~ 10161961 (+) True G133192
TU151694 other downstream 2492052 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 2666217 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 2897401 11476117 ~ 11476907 (+) False G133542

Expression Profile