RNA id: TU150117


Basic Information

Item Value
RNA id TU150117
length 222
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G131987
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8807348 ~ 8807569 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTGACACTCAGGCCCCAGAGATCCTGTCCCACAGACAGATGCCCAGACGGCCGGCGAGTCCCCGACCTGCCAGTCCGGTTCCATCGCCAATTCTACTGGTGACGGCTGTGACACGCGAGAAAACTGTCCGTGCCGAAATCCGTCACTTCCTTGCTACTTTCATCCCCCGCGCACTTCAAAACGTGACATGTGTCATCTGTAAGAAGCTTAGAGATGCCGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150116 lncRNA upstream 38 8807108 ~ 8807310 (+) True G131986
TU150105 lncRNA upstream 9500 8796305 ~ 8797848 (+) True G131975
TU150039 lncRNA upstream 98659 8708479 ~ 8708689 (+) True G131919
TU150010 lncRNA upstream 146998 8660037 ~ 8660350 (+) True G131890
TU149998 lncRNA upstream 222405 8584712 ~ 8584943 (+) True G131878
TU150119 lncRNA downstream 929 8808498 ~ 8808773 (+) True G131989
TU150139 lncRNA downstream 27428 8834997 ~ 8835347 (+) True G132009
TU150144 lncRNA downstream 41668 8849237 ~ 8849442 (+) True G132014
TU150085 lncRNA downstream 54944 8862513 ~ 8864396 (+) True G131960
TU150093 lncRNA downstream 79553 8887122 ~ 8888375 (+) True G131963
CI01000026_08474877_08483134.mRNA mRNA upstream 324080 8474877 ~ 8483268 (+) True CI01000026_08474877_08483134
CI01000026_08454661_08461606.mRNA mRNA upstream 345427 8454661 ~ 8461921 (+) True CI01000026_08454661_08461606
CI01000026_08447474_08449558.mRNA mRNA upstream 356737 8447396 ~ 8450611 (+) True CI01000026_08447474_08449558
CI01000026_08421799_08434134.mRNA mRNA upstream 373155 8421683 ~ 8434193 (+) True CI01000026_08421799_08434134
CI01000026_08313929_08318869.mRNA mRNA upstream 488457 8311795 ~ 8318891 (+) True CI01000026_08313929_08318869
CI01000026_08944583_08947981.mRNA mRNA downstream 136957 8944526 ~ 8947993 (+) True CI01000026_08944583_08947981
CI01000026_08950735_08960908.mRNA mRNA downstream 143094 8950663 ~ 8961146 (+) True CI01000026_08950735_08960908
CI01000026_09076625_09079154.mRNA mRNA downstream 267647 9075216 ~ 9079338 (+) True CI01000026_09076625_09079154
CI01000026_09175446_09178464.mRNA mRNA downstream 367680 9175249 ~ 9178488 (+) True CI01000026_09175446_09178464
CI01000026_09339450_09352303.mRNA mRNA downstream 531881 9339450 ~ 9353177 (+) True CI01000026_09339450_09352303
TU149067 other upstream 300561 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 507934 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 618275 8188374 ~ 8189073 (+) True G130967
TU148442 other upstream 1710696 7095053 ~ 7096652 (+) True G130552
TU146290 other upstream 2480563 6326278 ~ 6326785 (+) True G128757
TU150881 other downstream 761170 9568739 ~ 9569160 (+) False G132667
TU151441 other downstream 1352250 10159819 ~ 10161961 (+) True G133192
TU151694 other downstream 2263199 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 2437364 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 2668548 11476117 ~ 11476907 (+) False G133542

Expression Profile