RNA id: TU150363


Basic Information

Item Value
RNA id TU150363
length 340
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G132219
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8969151 ~ 8969490 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAAATCTGGAATCTAAGAGTGCAAAAAAATCTAAATATTGAGAAAATCGCCTTTAAAGTTGTCCAAATGAAGTCCTTAGCAATGCATATTCACTCACAAAAATACATTTTTTATATATTTACGGTAGTAAATTTACAAAATATCTTCATGGAACATGATCTTAATATCCTAATGATTTTTGGCATAAAAGAAAAATCGATAATTTTGACCCATACAATGTATTGTTGGCTAATGCTACAAATATACCCGTGCGACTTCTGACTGGTTTTGTGGTCCAGGATCACATTTAGTAAAATATTTGACTGTGTGGATGAAGTGTAAATTGGAAAACTCCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150173 lncRNA upstream 26052 8942854 ~ 8943099 (+) True G132043
TU150171 lncRNA upstream 27912 8940475 ~ 8941239 (+) True G132041
TU150093 lncRNA upstream 80776 8887122 ~ 8888375 (+) True G131963
TU150085 lncRNA upstream 104755 8862513 ~ 8864396 (+) True G131960
TU150144 lncRNA upstream 119709 8849237 ~ 8849442 (+) True G132014
TU150419 lncRNA downstream 42024 9011514 ~ 9058423 (+) True G132275
TU150437 lncRNA downstream 89318 9058808 ~ 9059309 (+) True G132289
TU150455 lncRNA downstream 122575 9092065 ~ 9092387 (+) True G132302
TU150459 lncRNA downstream 131159 9100649 ~ 9100890 (+) True G132306
TU150468 lncRNA downstream 148173 9117663 ~ 9117942 (+) True G132315
CI01000026_08950735_08960908.mRNA mRNA upstream 8005 8950663 ~ 8961146 (+) True CI01000026_08950735_08960908
CI01000026_08944583_08947981.mRNA mRNA upstream 21158 8944526 ~ 8947993 (+) True CI01000026_08944583_08947981
CI01000026_08474877_08483134.mRNA mRNA upstream 485883 8474877 ~ 8483268 (+) True CI01000026_08474877_08483134
CI01000026_08454661_08461606.mRNA mRNA upstream 507230 8454661 ~ 8461921 (+) True CI01000026_08454661_08461606
CI01000026_08447474_08449558.mRNA mRNA upstream 518540 8447396 ~ 8450611 (+) True CI01000026_08447474_08449558
CI01000026_09076625_09079154.mRNA mRNA downstream 105726 9075216 ~ 9079338 (+) True CI01000026_09076625_09079154
CI01000026_09175446_09178464.mRNA mRNA downstream 205759 9175249 ~ 9178488 (+) True CI01000026_09175446_09178464
CI01000026_09339450_09352303.mRNA mRNA downstream 369960 9339450 ~ 9353177 (+) True CI01000026_09339450_09352303
CI01000026_09365911_09428712.mRNA mRNA downstream 395417 9364907 ~ 9429076 (+) True CI01000026_09365911_09428712
CI01000026_09602263_09635635.mRNA mRNA downstream 632153 9601643 ~ 9636994 (+) True CI01000026_09602263_09635635
TU149067 other upstream 462364 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 669737 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 780078 8188374 ~ 8189073 (+) True G130967
TU148442 other upstream 1872499 7095053 ~ 7096652 (+) True G130552
TU146290 other upstream 2642366 6326278 ~ 6326785 (+) True G128757
TU150881 other downstream 599249 9568739 ~ 9569160 (+) False G132667
TU151441 other downstream 1190329 10159819 ~ 10161961 (+) True G133192
TU151694 other downstream 2101278 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 2275443 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 2506627 11476117 ~ 11476907 (+) False G133542

Expression Profile