RNA id: TU150459


Basic Information

Item Value
RNA id TU150459
length 242
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G132306
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 9100649 ~ 9100890 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTTGACAAGTGCTTTGTACTTCGGGTCTGTGTTTCTCTGGTAGGATCACAAGTCTGGATGTATTAATGGAAGAGAAGAGCTTCTATTAGGGCTGCAGACCGCACTGGCCTCAGCCATTTCAAAACCACTTTAAATGTGTATTAAATGATGAAATGAGACAACATCTTTTAAGCTCACAGTAGGGCTTTTCATTCCTCAGTGGAGCGTAGGTTCTAATAACAGAGCGGAGCTTTGAATCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150455 lncRNA upstream 8262 9092065 ~ 9092387 (+) True G132302
TU150437 lncRNA upstream 41340 9058808 ~ 9059309 (+) True G132289
TU150419 lncRNA upstream 42226 9011514 ~ 9058423 (+) True G132275
TU150363 lncRNA upstream 131159 8969151 ~ 8969490 (+) True G132219
TU150173 lncRNA upstream 157550 8942854 ~ 8943099 (+) True G132043
TU150468 lncRNA downstream 16773 9117663 ~ 9117942 (+) True G132315
TU150469 lncRNA downstream 17329 9118219 ~ 9118633 (+) True G132316
TU150535 lncRNA downstream 122959 9223849 ~ 9228165 (+) True G132377
TU150576 lncRNA downstream 197784 9298674 ~ 9299158 (+) True G132412
TU150585 lncRNA downstream 333201 9434091 ~ 9434320 (+) True G132421
CI01000026_09076625_09079154.mRNA mRNA upstream 21311 9075216 ~ 9079338 (+) True CI01000026_09076625_09079154
CI01000026_08950735_08960908.mRNA mRNA upstream 139503 8950663 ~ 8961146 (+) True CI01000026_08950735_08960908
CI01000026_08944583_08947981.mRNA mRNA upstream 152656 8944526 ~ 8947993 (+) True CI01000026_08944583_08947981
CI01000026_08474877_08483134.mRNA mRNA upstream 617381 8474877 ~ 8483268 (+) True CI01000026_08474877_08483134
CI01000026_08454661_08461606.mRNA mRNA upstream 638728 8454661 ~ 8461921 (+) True CI01000026_08454661_08461606
CI01000026_09175446_09178464.mRNA mRNA downstream 74359 9175249 ~ 9178488 (+) True CI01000026_09175446_09178464
CI01000026_09339450_09352303.mRNA mRNA downstream 238560 9339450 ~ 9353177 (+) True CI01000026_09339450_09352303
CI01000026_09365911_09428712.mRNA mRNA downstream 264017 9364907 ~ 9429076 (+) True CI01000026_09365911_09428712
CI01000026_09602263_09635635.mRNA mRNA downstream 500753 9601643 ~ 9636994 (+) True CI01000026_09602263_09635635
CI01000026_09666763_09669325.mRNA mRNA downstream 565790 9666680 ~ 9669702 (+) True CI01000026_09666763_09669325
TU149067 other upstream 593862 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 801235 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 911576 8188374 ~ 8189073 (+) True G130967
TU148442 other upstream 2003997 7095053 ~ 7096652 (+) True G130552
TU146290 other upstream 2773864 6326278 ~ 6326785 (+) True G128757
TU150881 other downstream 467849 9568739 ~ 9569160 (+) False G132667
TU151441 other downstream 1058929 10159819 ~ 10161961 (+) True G133192
TU151694 other downstream 1969878 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 2144043 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 2375227 11476117 ~ 11476907 (+) False G133542

Expression Profile