RNA id: TU150881


Basic Information

Item Value
RNA id TU150881
length 422
RNA type TUCP
GC content 0.43
exon number 1
gene id G132667
representative False

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 9568739 ~ 9569160 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAAATTCAGTATCTCAGAAAATTAGAATATTGTGAAAAGGTTCAATATTGAAGACCTGGTGCCACACTCTATAATCAGCTAATTAACTCAAAACACCTGCAAAGGCCTTTAAATGGTCTCTCAGTCTAGTTCTGTAGGCTACACAACCATGGGGAAGACTGCTGACTTGACAGTTGTCCAAAAGACGACCATTGACACCTTGCACAAGGAGGGCAAGACGCGAAAGGTCATTGCAAAAGAGGCTGGCTGTTCACAGAGCTCTGTGTCCAAGCACATTAATAGAGAGACGAAGGGAAGGAAAAGATATGGTAGAAAAAAGTGTACAAGCAATAGGGATAACCGCACACTGGAGAGGATTGTGAAACAAAACCCATTCAAAAATGTGGGGGAGATTCACAAAGAGTGGACTGCAGCTGGAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150877 lncRNA upstream 5754 9562777 ~ 9562985 (+) True G132664
TU150872 lncRNA upstream 16185 9552354 ~ 9552554 (+) True G132659
TU150871 lncRNA upstream 16665 9551715 ~ 9552074 (+) True G132658
TU150868 lncRNA upstream 17276 9550864 ~ 9551463 (+) False G132656
TU150867 lncRNA upstream 17276 9550916 ~ 9551463 (+) True G132656
TU151006 lncRNA downstream 104502 9673662 ~ 9673926 (+) True G132783
TU151091 lncRNA downstream 218172 9787332 ~ 9787570 (+) True G132867
TU151092 lncRNA downstream 218696 9787856 ~ 9788078 (+) True G132868
TU151103 lncRNA downstream 234182 9803342 ~ 9803600 (+) True G132879
TU151112 lncRNA downstream 248526 9817686 ~ 9817965 (+) True G132888
CI01000026_09365911_09428712.mRNA mRNA upstream 139663 9364907 ~ 9429076 (+) True CI01000026_09365911_09428712
CI01000026_09339450_09352303.mRNA mRNA upstream 215562 9339450 ~ 9353177 (+) True CI01000026_09339450_09352303
CI01000026_09175446_09178464.mRNA mRNA upstream 390251 9175249 ~ 9178488 (+) True CI01000026_09175446_09178464
CI01000026_09076625_09079154.mRNA mRNA upstream 489401 9075216 ~ 9079338 (+) True CI01000026_09076625_09079154
CI01000026_08950735_08960908.mRNA mRNA upstream 607593 8950663 ~ 8961146 (+) True CI01000026_08950735_08960908
CI01000026_09602263_09635635.mRNA mRNA downstream 32483 9601643 ~ 9636994 (+) True CI01000026_09602263_09635635
CI01000026_09666763_09669325.mRNA mRNA downstream 97520 9666680 ~ 9669702 (+) True CI01000026_09666763_09669325
CI01000026_09900193_09906874.mRNA mRNA downstream 331033 9900193 ~ 9907237 (+) True CI01000026_09900193_09906874
CI01000026_09915483_09917692.mRNA mRNA downstream 346285 9915445 ~ 9917919 (+) True CI01000026_09915483_09917692
CI01000026_10124232_10124468.mRNA mRNA downstream 554756 10123916 ~ 10125835 (+) True CI01000026_10124232_10124468
TU149067 other upstream 1061952 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 1269325 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 1379666 8188374 ~ 8189073 (+) True G130967
TU148442 other upstream 2472087 7095053 ~ 7096652 (+) True G130552
TU146291 other upstream 3241954 6326196 ~ 6326785 (+) False G128757
TU151441 other downstream 590659 10159819 ~ 10161961 (+) True G133192
TU151694 other downstream 1501608 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 1675773 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 1906957 11476117 ~ 11476907 (+) False G133542

Expression Profile