Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU151441 |
| length | 1520 |
| RNA type | TUCP |
| GC content | 0.40 |
| exon number | 3 |
| gene id | G133192 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000026 |
| NCBI id | null |
| chromosome length | 17172400 |
| location | 10159819 ~ 10161961 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU151437 | lncRNA | upstream | 7618 | 10102019 ~ 10152201 (+) | True | G133188 |
| TU151398 | lncRNA | upstream | 90946 | 10068576 ~ 10068873 (+) | True | G133153 |
| TU151206 | lncRNA | upstream | 129308 | 10030239 ~ 10030511 (+) | True | G132977 |
| TU151203 | lncRNA | upstream | 137542 | 10022076 ~ 10022277 (+) | True | G132974 |
| TU151178 | lncRNA | upstream | 171156 | 9988139 ~ 9988663 (+) | True | G132949 |
| TU151542 | lncRNA | downstream | 108106 | 10270067 ~ 10270293 (+) | True | G133281 |
| TU151546 | lncRNA | downstream | 115604 | 10277565 ~ 10277783 (+) | True | G133285 |
| TU151547 | lncRNA | downstream | 117762 | 10279723 ~ 10279929 (+) | True | G133286 |
| TU151565 | lncRNA | downstream | 137215 | 10299176 ~ 10299384 (+) | True | G133303 |
| TU151572 | lncRNA | downstream | 144429 | 10306390 ~ 10306607 (+) | True | G133310 |
| CI01000026_10136110_10149386.mRNA | mRNA | upstream | 10353 | 10135996 ~ 10149466 (+) | True | CI01000026_10136110_10149386 |
| CI01000026_10124232_10124468.mRNA | mRNA | upstream | 33984 | 10123916 ~ 10125835 (+) | True | CI01000026_10124232_10124468 |
| CI01000026_09915483_09917692.mRNA | mRNA | upstream | 241900 | 9915445 ~ 9917919 (+) | True | CI01000026_09915483_09917692 |
| CI01000026_09900193_09906874.mRNA | mRNA | upstream | 252582 | 9900193 ~ 9907237 (+) | True | CI01000026_09900193_09906874 |
| CI01000026_09666763_09669325.mRNA | mRNA | upstream | 490117 | 9666680 ~ 9669702 (+) | True | CI01000026_09666763_09669325 |
| CI01000026_10200749_10202405.mRNA | mRNA | downstream | 36632 | 10198593 ~ 10202514 (+) | True | CI01000026_10200749_10202405 |
| CI01000026_10265012_10268157.mRNA | mRNA | downstream | 102984 | 10264945 ~ 10268548 (+) | True | CI01000026_10265012_10268157 |
| CI01000026_10315650_10317985.mRNA | mRNA | downstream | 153118 | 10315079 ~ 10317990 (+) | False | CI01000026_10315650_10317985 |
| CI01000026_10351923_10354175.mRNA | mRNA | downstream | 189442 | 10351403 ~ 10356695 (+) | False | CI01000026_10351923_10354175 |
| CI01000026_10453245_10454111.mRNA | mRNA | downstream | 291164 | 10453125 ~ 10454176 (+) | True | CI01000026_10453245_10454111 |
| TU150881 | other | upstream | 590659 | 9568739 ~ 9569160 (+) | False | G132667 |
| TU149067 | other | upstream | 1653032 | 8501408 ~ 8506787 (+) | True | G131077 |
| TU148972 | other | upstream | 1860405 | 8298573 ~ 8299414 (+) | False | CI01000026_08297901_08307596 |
| TU148937 | other | upstream | 1970746 | 8188374 ~ 8189073 (+) | True | G130967 |
| TU148442 | other | upstream | 3063167 | 7095053 ~ 7096652 (+) | True | G130552 |
| TU151694 | other | downstream | 908807 | 11070768 ~ 11070876 (+) | True | G133429 |
| TU151777 | other | downstream | 1082972 | 11244933 ~ 11255073 (+) | True | G133497 |
| TU151829 | other | downstream | 1314156 | 11476117 ~ 11476907 (+) | False | G133542 |
