RNA id: TU151542


Basic Information

Item Value
RNA id TU151542
length 227
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G133281
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10270067 ~ 10270293 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTACATAAATTTATCCACTAACCATTCAAAAATGTCCAGTTGCATTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCCAACTCCGGTTTGAACAATGTAATGCTGAACACCGTTACCGACAATCGTCATTTTGCCTGCGTGAAATTCTCCAGTTTTTTTTGTTGTTGAGAAACCGAAGCATGAGCGGTTAAAGCTCTGCCCTCTTCTGGAATGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151437 lncRNA upstream 117866 10102019 ~ 10152201 (+) True G133188
TU151398 lncRNA upstream 201194 10068576 ~ 10068873 (+) True G133153
TU151206 lncRNA upstream 239556 10030239 ~ 10030511 (+) True G132977
TU151203 lncRNA upstream 247790 10022076 ~ 10022277 (+) True G132974
TU151178 lncRNA upstream 281404 9988139 ~ 9988663 (+) True G132949
TU151546 lncRNA downstream 7272 10277565 ~ 10277783 (+) True G133285
TU151547 lncRNA downstream 9430 10279723 ~ 10279929 (+) True G133286
TU151565 lncRNA downstream 28883 10299176 ~ 10299384 (+) True G133303
TU151572 lncRNA downstream 36097 10306390 ~ 10306607 (+) True G133310
TU151574 lncRNA downstream 37722 10308015 ~ 10308226 (+) True G133312
CI01000026_10265012_10268157.mRNA mRNA upstream 1519 10264945 ~ 10268548 (+) True CI01000026_10265012_10268157
CI01000026_10200749_10202405.mRNA mRNA upstream 67553 10198593 ~ 10202514 (+) True CI01000026_10200749_10202405
CI01000026_10136110_10149386.mRNA mRNA upstream 120601 10135996 ~ 10149466 (+) True CI01000026_10136110_10149386
CI01000026_10124232_10124468.mRNA mRNA upstream 144232 10123916 ~ 10125835 (+) True CI01000026_10124232_10124468
CI01000026_09915483_09917692.mRNA mRNA upstream 352148 9915445 ~ 9917919 (+) True CI01000026_09915483_09917692
CI01000026_10315650_10317985.mRNA mRNA downstream 44786 10315079 ~ 10317990 (+) False CI01000026_10315650_10317985
CI01000026_10351923_10354175.mRNA mRNA downstream 81110 10351403 ~ 10356695 (+) False CI01000026_10351923_10354175
CI01000026_10453245_10454111.mRNA mRNA downstream 182832 10453125 ~ 10454176 (+) True CI01000026_10453245_10454111
CI01000026_10455059_10456945.mRNA mRNA downstream 184766 10455059 ~ 10457563 (+) True CI01000026_10455059_10456945
CI01000026_10458602_10465979.mRNA mRNA downstream 188309 10458602 ~ 10466513 (+) True CI01000026_10458602_10465979
TU151441 other upstream 108106 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 700907 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 1763280 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 1970653 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 2080994 8188374 ~ 8189073 (+) True G130967
TU151694 other downstream 800475 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 974640 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 1205824 11476117 ~ 11476907 (+) False G133542

Expression Profile