RNA id: TU151591


Basic Information

Item Value
RNA id TU151591
length 371
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G133329
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10343306 ~ 10343676 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGGATTGAAAACAAGAGTGGGTAGAGCTCCTTAACAGGGCAAGAAAACAAGCCAGGCGTAAATGAGACGTAAAGCAAAACAGCAAATGAGAGCTTGCTGAAAAATGTTACTCAATTAACTTTAGAATGCATCGATCCCTGTTTTTCTGCAATCAATCTCCATCTTGACAATTCTCGCAGCAAAGAGCTAAAGCATTTACTTACTTCACAGAGAAAAAAAGAATGAGAGCGGTGTGTGATTTTTCTGTGCGGTTTAACCTCTTCTTGGTTGTCTTGGCAACTCTCAAGTTCAGGTTCCAGGCTTCTAACGACCATCCCTAAGCAAACAAACATTGATATACTTCCTTCTATTGCACTGGGCTCAGGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151588 lncRNA upstream 10505 10332594 ~ 10332801 (+) True G133326
TU151586 lncRNA upstream 15211 10327868 ~ 10328095 (+) True G133324
TU151585 lncRNA upstream 16450 10326657 ~ 10326856 (+) True G133323
TU151582 lncRNA upstream 22388 10320640 ~ 10320918 (+) True G133320
TU151581 lncRNA upstream 24534 10318494 ~ 10318772 (+) True G133319
TU151592 lncRNA downstream 35 10343711 ~ 10344066 (+) True G133330
TU151513 lncRNA downstream 11143 10354819 ~ 10355477 (+) True CI01000026_10351923_10354175
TU151598 lncRNA downstream 29722 10373398 ~ 10373955 (+) True G133336
TU151600 lncRNA downstream 37578 10381254 ~ 10381549 (+) True G133338
TU151601 lncRNA downstream 37878 10381554 ~ 10381758 (+) True G133339
CI01000026_10315650_10317985.mRNA mRNA upstream 25316 10315079 ~ 10317990 (+) False CI01000026_10315650_10317985
CI01000026_10265012_10268157.mRNA mRNA upstream 74758 10264945 ~ 10268548 (+) True CI01000026_10265012_10268157
CI01000026_10200749_10202405.mRNA mRNA upstream 140792 10198593 ~ 10202514 (+) True CI01000026_10200749_10202405
CI01000026_10136110_10149386.mRNA mRNA upstream 193840 10135996 ~ 10149466 (+) True CI01000026_10136110_10149386
CI01000026_10124232_10124468.mRNA mRNA upstream 217471 10123916 ~ 10125835 (+) True CI01000026_10124232_10124468
CI01000026_10351923_10354175.mRNA mRNA downstream 7727 10351403 ~ 10356695 (+) False CI01000026_10351923_10354175
CI01000026_10453245_10454111.mRNA mRNA downstream 109449 10453125 ~ 10454176 (+) True CI01000026_10453245_10454111
CI01000026_10455059_10456945.mRNA mRNA downstream 111383 10455059 ~ 10457563 (+) True CI01000026_10455059_10456945
CI01000026_10458602_10465979.mRNA mRNA downstream 114926 10458602 ~ 10466513 (+) True CI01000026_10458602_10465979
CI01000026_10468478_10482863.mRNA mRNA downstream 124802 10468478 ~ 10482955 (+) True CI01000026_10468478_10482863
TU151441 other upstream 181345 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 774146 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 1836519 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 2043892 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 2154233 8188374 ~ 8189073 (+) True G130967
TU151694 other downstream 727092 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 901257 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 1132441 11476117 ~ 11476907 (+) False G133542

Expression Profile