RNA id: TU151600


Basic Information

Item Value
RNA id TU151600
length 296
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G133338
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10381254 ~ 10381549 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAGCTGCCGGTCCTTCTCCTCTCGAGGAAAAGACCAGAGGAGAGTGGAGCATTTTACAAGTAAAACACATTCACAATAACAAACAGACAGATCCAACAAGAACTGCCTGTACATGCTCTTTTGTTCTCATAAAAGACAACGTTATAAGTTATGTATGTGATCAGATGTCAACACTATGGGATATAGATGCACACACTTCCTGAAACGTTTGTCAGACATAAATTGTCTTACCTTAATATCGGTTTGATATCGTTCAAAACAGAACAGTCCCTGAAGACGAAAAGATACTGACTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151598 lncRNA upstream 7299 10373398 ~ 10373955 (+) True G133336
TU151513 lncRNA upstream 25777 10354819 ~ 10355477 (+) True CI01000026_10351923_10354175
TU151592 lncRNA upstream 37188 10343711 ~ 10344066 (+) True G133330
TU151591 lncRNA upstream 37578 10343306 ~ 10343676 (+) True G133329
TU151588 lncRNA upstream 48453 10332594 ~ 10332801 (+) True G133326
TU151601 lncRNA downstream 5 10381554 ~ 10381758 (+) True G133339
TU151606 lncRNA downstream 5493 10387042 ~ 10387244 (+) True G133344
TU151635 lncRNA downstream 133871 10515420 ~ 10515648 (+) True G133373
TU151646 lncRNA downstream 171411 10552960 ~ 10628076 (+) True G133383
TU151669 lncRNA downstream 403243 10784792 ~ 10785562 (+) True G133406
CI01000026_10351923_10354175.mRNA mRNA upstream 24559 10351403 ~ 10356695 (+) False CI01000026_10351923_10354175
CI01000026_10315650_10317985.mRNA mRNA upstream 63264 10315079 ~ 10317990 (+) False CI01000026_10315650_10317985
CI01000026_10265012_10268157.mRNA mRNA upstream 112706 10264945 ~ 10268548 (+) True CI01000026_10265012_10268157
CI01000026_10200749_10202405.mRNA mRNA upstream 178740 10198593 ~ 10202514 (+) True CI01000026_10200749_10202405
CI01000026_10136110_10149386.mRNA mRNA upstream 231788 10135996 ~ 10149466 (+) True CI01000026_10136110_10149386
CI01000026_10453245_10454111.mRNA mRNA downstream 71576 10453125 ~ 10454176 (+) True CI01000026_10453245_10454111
CI01000026_10455059_10456945.mRNA mRNA downstream 73510 10455059 ~ 10457563 (+) True CI01000026_10455059_10456945
CI01000026_10458602_10465979.mRNA mRNA downstream 77053 10458602 ~ 10466513 (+) True CI01000026_10458602_10465979
CI01000026_10468478_10482863.mRNA mRNA downstream 86929 10468478 ~ 10482955 (+) True CI01000026_10468478_10482863
CI01000026_10521984_10543018.mRNA mRNA downstream 140435 10521984 ~ 10543108 (+) True CI01000026_10521984_10543018
TU151441 other upstream 219293 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 812094 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 1874467 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 2081840 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 2192181 8188374 ~ 8189073 (+) True G130967
TU151694 other downstream 689219 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 863384 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 1094568 11476117 ~ 11476907 (+) False G133542

Expression Profile