Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU152533 |
| length | 1410 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G134120 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000026 |
| NCBI id | null |
| chromosome length | 17172400 |
| location | 12005870 ~ 12032406 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU152560 | lncRNA | upstream | 112979 | 11912221 ~ 11913432 (+) | True | G134145 |
| TU152555 | lncRNA | upstream | 134809 | 11861568 ~ 11891602 (+) | False | G134141 |
| TU152556 | lncRNA | upstream | 134809 | 11861750 ~ 11891602 (+) | True | G134141 |
| TU151906 | lncRNA | upstream | 274236 | 11751165 ~ 11752175 (+) | True | G133608 |
| TU151893 | lncRNA | upstream | 292406 | 11733745 ~ 11734005 (+) | True | G133596 |
| TU152613 | lncRNA | downstream | 111103 | 12143509 ~ 12143787 (+) | True | G134197 |
| TU152617 | lncRNA | downstream | 118113 | 12150519 ~ 12150775 (+) | True | G134201 |
| TU152631 | lncRNA | downstream | 162778 | 12195184 ~ 12195417 (+) | True | G134215 |
| TU152633 | lncRNA | downstream | 164095 | 12196501 ~ 12196758 (+) | True | G134217 |
| TU152634 | lncRNA | downstream | 164684 | 12197090 ~ 12197300 (+) | True | G134218 |
| CI01000026_11862091_11976290.mRNA | mRNA | upstream | 50121 | 11862091 ~ 11976290 (+) | True | CI01000026_11862091_11976290 |
| CI01000026_11809092_11810238.mRNA | mRNA | upstream | 216000 | 11808462 ~ 11810411 (+) | True | CI01000026_11809092_11810238 |
| CI01000026_11792044_11807684.mRNA | mRNA | upstream | 218137 | 11792044 ~ 11808274 (+) | True | CI01000026_11792044_11807684 |
| CI01000026_11756587_11788914.mRNA | mRNA | upstream | 237339 | 11756587 ~ 11789072 (+) | True | CI01000026_11756587_11788914 |
| CI01000026_11705009_11707949.mRNA | mRNA | upstream | 318335 | 11705009 ~ 11708076 (+) | True | CI01000026_11705009_11707949 |
| CI01000026_12074163_12076475.mRNA | mRNA | downstream | 41407 | 12073813 ~ 12077540 (+) | True | CI01000026_12074163_12076475 |
| CI01000026_12094316_12125431.mRNA | mRNA | downstream | 61910 | 12094316 ~ 12126264 (+) | True | CI01000026_12094316_12125431 |
| CI01000026_12192269_12200366.mRNA | mRNA | downstream | 159246 | 12191652 ~ 12200734 (+) | True | CI01000026_12192269_12200366 |
| CI01000026_12203244_12209526.mRNA | mRNA | downstream | 168952 | 12201358 ~ 12209698 (+) | True | CI01000026_12203244_12209526 |
| CI01000026_12425699_12438163.mRNA | mRNA | downstream | 391673 | 12424079 ~ 12438621 (+) | True | CI01000026_12425699_12438163 |
| TU151829 | other | upstream | 549504 | 11476117 ~ 11476907 (+) | False | G133542 |
| TU151777 | other | upstream | 771338 | 11244933 ~ 11255073 (+) | True | G133497 |
| TU151694 | other | upstream | 947331 | 11070768 ~ 11070876 (+) | True | G133429 |
| TU151441 | other | upstream | 1864450 | 10159819 ~ 10161961 (+) | True | G133192 |
| TU150881 | other | upstream | 2457251 | 9568739 ~ 9569160 (+) | False | G132667 |
