RNA id: TU154200


Basic Information

Item Value
RNA id TU154200
length 294
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G135632
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 14224159 ~ 14224452 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAAGGAAAATCCCAGATTTAGTATCTCAGAAAATTAGAATATTACTTAAGACCAATACAAAGAAAGGATTTTTAGAAATCTTGGCCAATTGAAAAGTATGAACATGAAAAGTATGAGCATGTACAGCACTCAATACTTAGTTGGGGCTCCTTTTGCCTGAATTACTGCAGCAATGTGGCGTGGCATGGAGTCGATCAGTCTGTGGCACTGCTCAGGTGTTATAAGAGCCCAGGTTGCTCTGATAGTGGCCTTCAGCTCTTCTGCATTGTTGGGTCTGGCATATCGCATCTTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154199 lncRNA downstream 768 14223096 ~ 14223391 (-) True G135631
TU154191 lncRNA downstream 75045 14148899 ~ 14149114 (-) True G135623
TU154189 lncRNA downstream 76282 14147638 ~ 14147877 (-) True G135621
TU154015 lncRNA downstream 243868 13980044 ~ 13980291 (-) True G135456
TU154007 lncRNA downstream 257934 13965957 ~ 13966225 (-) True G135448
TU154201 lncRNA upstream 892 14225344 ~ 14225561 (-) True G135633
TU154295 lncRNA upstream 76323 14300775 ~ 14301243 (-) True G135725
TU154343 lncRNA upstream 110119 14334571 ~ 14334908 (-) True G135771
TU154459 lncRNA upstream 179445 14403897 ~ 14404114 (-) True G135886
TU154491 lncRNA upstream 224154 14448606 ~ 14448839 (-) True G135917
CI01000026_14156809_14170720.mRNA mRNA downstream 53439 14156349 ~ 14170720 (-) True CI01000026_14156809_14170720
CI01000026_13744060_13791879.mRNA mRNA downstream 432280 13744060 ~ 13791879 (-) True CI01000026_13744060_13791879
CI01000026_13299234_13300178.mRNA mRNA downstream 923219 13298482 ~ 13300940 (-) False CI01000026_13299234_13300178
CI01000026_13082079_13210565.mRNA mRNA downstream 1013594 13082079 ~ 13210565 (-) True CI01000026_13082079_13210565
CI01000026_13053390_13065531.mRNA mRNA downstream 1158628 13051213 ~ 13065531 (-) True CI01000026_13053390_13065531
CI01000026_14376741_14381102.mRNA mRNA upstream 152118 14376570 ~ 14382093 (-) True CI01000026_14376741_14381102
CI01000026_14680424_14682203.mRNA mRNA upstream 455907 14680359 ~ 14682203 (-) True CI01000026_14680424_14682203
CI01000026_14684215_14684738.mRNA mRNA upstream 459751 14684203 ~ 14685091 (-) True CI01000026_14684215_14684738
CI01000026_14697383_14715245.mRNA mRNA upstream 472591 14697043 ~ 14715245 (-) True CI01000026_14697383_14715245
CI01000026_14720591_14737569.mRNA mRNA upstream 495364 14719816 ~ 14737569 (-) True CI01000026_14720591_14737569
TU152172 other downstream 2916978 11301915 ~ 11307181 (-) True G133802
TU152150 other downstream 3386554 10834015 ~ 10837605 (-) False G133790
TU152144 other downstream 3434005 10790055 ~ 10790154 (-) True G133789
TU152143 other downstream 3434005 10790055 ~ 10790154 (-) True G133789
TU151953 other downstream 3875202 10348193 ~ 10348957 (-) True CI01000026_10347872_10351783
TU154700 other upstream 330465 14554917 ~ 14555436 (-) True G136110
TU156370 other upstream 2532277 16756729 ~ 16758327 (-) False CI01000026_16756776_16760261
TU156388 other upstream 2581912 16806364 ~ 16808372 (-) True G137667
TU156657 other upstream 2758799 16983251 ~ 16984352 (-) True G137914
TU156715 other upstream 2843896 17068348 ~ 17069433 (-) True G137967

Expression Profile