RNA id: TU154343



Basic Information


Item Value
RNA id TU154343
length 338
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G135771
representative True

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 14334571 ~ 14334908 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCGCACCAAGGCTAAGACCGATCGCCACCGGTCGAAGCCTCCCGTATACGTCGTGGGTCAAAAGGTGTGGCTTTCTACCAAGAACATTCCGCTCCGCTCCGTATCTAACAAGTTAGCTCCCAAATTTATTGGCCCGTTCCCTGTCACCAAGATCATTAGTCCGGTGGCTGTCCGACTCAAACTTCCTCCGGCGTACAGGAGAATACATCCCGCCTTCCATGTATCAAAGATTAAACCCGTGTTTCATTCACACATTAATCCGCCGGCCCCGGTTCCCCCACCGCCGCTACTCGTAGACGGGGAACCTACATATTCGGTAAACCGTATTCTGGACTCGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU154295 lncRNA downstream 33328 14300775 ~ 14301243 (-) True G135725
TU154201 lncRNA downstream 109010 14225344 ~ 14225561 (-) True G135633
TU154200 lncRNA downstream 110119 14224159 ~ 14224452 (-) True G135632
TU154199 lncRNA downstream 111180 14223096 ~ 14223391 (-) True G135631
TU154191 lncRNA downstream 185457 14148899 ~ 14149114 (-) True G135623
TU154459 lncRNA upstream 68989 14403897 ~ 14404114 (-) True G135886
TU154491 lncRNA upstream 113698 14448606 ~ 14448839 (-) True G135917
TU154501 lncRNA upstream 127369 14462277 ~ 14462577 (-) True G135927
TU154708 lncRNA upstream 239558 14574466 ~ 14574723 (-) True G136118
TU154694 lncRNA upstream 241263 14576171 ~ 14579318 (-) True G136107
CI01000026_14156809_14170720.mRNA mRNA downstream 163851 14156349 ~ 14170720 (-) True CI01000026_14156809_14170720
CI01000026_13744060_13791879.mRNA mRNA downstream 542692 13744060 ~ 13791879 (-) True CI01000026_13744060_13791879
CI01000026_13299234_13300178.mRNA mRNA downstream 1033631 13298482 ~ 13300940 (-) False CI01000026_13299234_13300178
CI01000026_13082079_13210565.mRNA mRNA downstream 1124006 13082079 ~ 13210565 (-) True CI01000026_13082079_13210565
CI01000026_13053390_13065531.mRNA mRNA downstream 1269040 13051213 ~ 13065531 (-) True CI01000026_13053390_13065531
CI01000026_14376741_14381102.mRNA mRNA upstream 41662 14376570 ~ 14382093 (-) True CI01000026_14376741_14381102
CI01000026_14680424_14682203.mRNA mRNA upstream 345451 14680359 ~ 14682203 (-) True CI01000026_14680424_14682203
CI01000026_14684215_14684738.mRNA mRNA upstream 349295 14684203 ~ 14685091 (-) True CI01000026_14684215_14684738
CI01000026_14697383_14715245.mRNA mRNA upstream 362135 14697043 ~ 14715245 (-) True CI01000026_14697383_14715245
CI01000026_14720591_14737569.mRNA mRNA upstream 384908 14719816 ~ 14737569 (-) True CI01000026_14720591_14737569
TU152172 other downstream 3027390 11301915 ~ 11307181 (-) True G133802
TU152150 other downstream 3496966 10834015 ~ 10837605 (-) False G133790
TU152144 other downstream 3544417 10790055 ~ 10790154 (-) True G133789
TU152143 other downstream 3544417 10790055 ~ 10790154 (-) True G133789
TU151953 other downstream 3985614 10348193 ~ 10348957 (-) True CI01000026_10347872_10351783
TU154700 other upstream 220009 14554917 ~ 14555436 (-) True G136110
TU156370 other upstream 2421821 16756729 ~ 16758327 (-) False CI01000026_16756776_16760261
TU156388 other upstream 2471456 16806364 ~ 16808372 (-) True G137667
TU156657 other upstream 2648343 16983251 ~ 16984352 (-) True G137914
TU156715 other upstream 2733440 17068348 ~ 17069433 (-) True G137967

Expression Profile