RNA id: TU154459


Basic Information

Item Value
RNA id TU154459
length 218
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G135886
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 14403897 ~ 14404114 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACAATCACTCGAGACCCTTTCAGCATTTTTTCAGCATAGTATCAACTCATTCAAGTGCCTGAGCATTTGAAGTGCTTGTCTTATAGGAAAATGTCACATGACATAGTACTGTTGGATCTTAGGTTAGTGTTGCCAAGTCCGCGGTTTTCCTGCGGAATTGGGCTACTTTTACACTGTTGCCGCGGGTTGTATTTCATGTCCGCGGGTTGAATCGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154343 lncRNA downstream 68989 14334571 ~ 14334908 (-) True G135771
TU154295 lncRNA downstream 102654 14300775 ~ 14301243 (-) True G135725
TU154201 lncRNA downstream 178336 14225344 ~ 14225561 (-) True G135633
TU154200 lncRNA downstream 179445 14224159 ~ 14224452 (-) True G135632
TU154199 lncRNA downstream 180506 14223096 ~ 14223391 (-) True G135631
TU154491 lncRNA upstream 44492 14448606 ~ 14448839 (-) True G135917
TU154501 lncRNA upstream 58163 14462277 ~ 14462577 (-) True G135927
TU154708 lncRNA upstream 170352 14574466 ~ 14574723 (-) True G136118
TU154694 lncRNA upstream 172057 14576171 ~ 14579318 (-) True G136107
TU154688 lncRNA upstream 185816 14589930 ~ 14636003 (-) True G136103
CI01000026_14376741_14381102.mRNA mRNA downstream 21804 14376570 ~ 14382093 (-) True CI01000026_14376741_14381102
CI01000026_14156809_14170720.mRNA mRNA downstream 233177 14156349 ~ 14170720 (-) True CI01000026_14156809_14170720
CI01000026_13744060_13791879.mRNA mRNA downstream 612018 13744060 ~ 13791879 (-) True CI01000026_13744060_13791879
CI01000026_13299234_13300178.mRNA mRNA downstream 1102957 13298482 ~ 13300940 (-) False CI01000026_13299234_13300178
CI01000026_13082079_13210565.mRNA mRNA downstream 1193332 13082079 ~ 13210565 (-) True CI01000026_13082079_13210565
CI01000026_14680424_14682203.mRNA mRNA upstream 276245 14680359 ~ 14682203 (-) True CI01000026_14680424_14682203
CI01000026_14684215_14684738.mRNA mRNA upstream 280089 14684203 ~ 14685091 (-) True CI01000026_14684215_14684738
CI01000026_14697383_14715245.mRNA mRNA upstream 292929 14697043 ~ 14715245 (-) True CI01000026_14697383_14715245
CI01000026_14720591_14737569.mRNA mRNA upstream 315702 14719816 ~ 14737569 (-) True CI01000026_14720591_14737569
CI01000026_14780225_14789500.mRNA mRNA upstream 375974 14780088 ~ 14790709 (-) True CI01000026_14780225_14789500
TU152172 other downstream 3096716 11301915 ~ 11307181 (-) True G133802
TU152150 other downstream 3566292 10834015 ~ 10837605 (-) False G133790
TU152144 other downstream 3613743 10790055 ~ 10790154 (-) True G133789
TU152143 other downstream 3613743 10790055 ~ 10790154 (-) True G133789
TU151953 other downstream 4054940 10348193 ~ 10348957 (-) True CI01000026_10347872_10351783
TU154700 other upstream 150803 14554917 ~ 14555436 (-) True G136110
TU156370 other upstream 2352615 16756729 ~ 16758327 (-) False CI01000026_16756776_16760261
TU156388 other upstream 2402250 16806364 ~ 16808372 (-) True G137667
TU156657 other upstream 2579137 16983251 ~ 16984352 (-) True G137914
TU156715 other upstream 2664234 17068348 ~ 17069433 (-) True G137967

Expression Profile