RNA id: TU155778


Basic Information

Item Value
RNA id TU155778
length 666
lncRNA type intronic
GC content 0.33
exon number 1
gene id G137126
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 15886242 ~ 15886907 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCGATTAAAAAAATAAACAATTAAGTGTGCATATTAGCTGCCTGGTTGTTTTTAAATTCACTACAGCAGTGGTTCCCAAACATTTTACAGTCGCGTACCCCCTGCATTTAACCTCCTTCTGTGTACCCCCTCTCTTCAACTTAGACTGCTGCAGTCACACCTTTTCCATTAAGGAACAATATTTTCCCCCTCAAACTGATTGTTCATTAAAGTGCTTTTTTCTTTTTTTTTTTACCTTTATAAATACCTTTATAAAATAAACAATGTTTTAAATTAAAAATGTCCAATAGAGAAATAAGCAATGATGTTAAAATGACATGATACTTTAAATATTGAACTAAAACCGCCAGTAGGTGGCACTAAGTCACTGTCTTAATGAGTGAGTCATCGAGTCATTCATTCATTCAGTAATGAACCAAGTGGCTGTATTTTTGAATGGGTAATTGAATCATTGACTCTCATGATTTGTTTACAGTCACAGATTCGTTCACAAAACATTGCTGTGAGTTGCAGTTCTGCTGTGGCTTTCGTTGGAACTATTATTTTGTTTTGTTGGAACTATTATTTTGCAAAATACAGCAAACAATAGTGTTTAAAATGTACTTCGCTTAATATTACCCTTTTGTTTGTTGAACTGTTATATAAAATCAATGTCACGTTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155761 lncRNA downstream 12575 15873460 ~ 15873667 (-) True G137109
TU155746 lncRNA downstream 30964 15855001 ~ 15855278 (-) True G137094
TU155744 lncRNA downstream 34596 15851365 ~ 15851646 (-) True G137092
TU155692 lncRNA downstream 108954 15770648 ~ 15777288 (-) True G137042
TU155641 lncRNA downstream 169617 15715533 ~ 15716625 (-) True G136993
TU155780 lncRNA upstream 3371 15890278 ~ 15890502 (-) True G137128
TU155782 lncRNA upstream 4385 15891292 ~ 15891546 (-) True G137130
TU155911 lncRNA upstream 178413 16065320 ~ 16065547 (-) True G137246
TU156302 lncRNA upstream 208108 16095015 ~ 16095270 (-) True G137596
TU156331 lncRNA upstream 283992 16170899 ~ 16171293 (-) True G137625
CI01000026_15780006_15782114.mRNA mRNA downstream 103967 15779650 ~ 15782275 (-) True CI01000026_15780006_15782114
CI01000026_15617263_15620665.mRNA mRNA downstream 265295 15616920 ~ 15620947 (-) True CI01000026_15617263_15620665
CI01000026_15604078_15614242.mRNA mRNA downstream 271587 15603964 ~ 15614655 (-) True CI01000026_15604078_15614242
CI01000026_15457228_15461956.mRNA mRNA downstream 424286 15457198 ~ 15461956 (-) True CI01000026_15457228_15461956
CI01000026_15444272_15445552.mRNA mRNA downstream 440690 15444052 ~ 15445552 (-) True CI01000026_15444272_15445552
CI01000026_15930136_15933539.mRNA mRNA upstream 42896 15929803 ~ 15933539 (-) True CI01000026_15930136_15933539
CI01000026_16297047_16419596.mRNA mRNA upstream 409735 16296642 ~ 16419739 (-) True CI01000026_16297047_16419596
CI01000026_16432592_16456842.mRNA mRNA upstream 545620 16432527 ~ 16456842 (-) True CI01000026_16432592_16456842
CI01000026_16553812_16554906.mRNA mRNA upstream 666475 16553382 ~ 16555883 (-) True CI01000026_16553812_16554906
CI01000026_16645459_16698069.mRNA mRNA upstream 758357 16645264 ~ 16698069 (-) False CI01000026_16645459_16698069
TU154700 other downstream 1330806 14554917 ~ 14555436 (-) True G136110
TU152172 other downstream 4579061 11301915 ~ 11307181 (-) True G133802
TU152150 other downstream 5048637 10834015 ~ 10837605 (-) False G133790
TU152144 other downstream 5096088 10790055 ~ 10790154 (-) True G133789
TU156370 other upstream 869822 16756729 ~ 16758327 (-) False CI01000026_16756776_16760261
TU156388 other upstream 919457 16806364 ~ 16808372 (-) True G137667
TU156657 other upstream 1096344 16983251 ~ 16984352 (-) True G137914
TU156715 other upstream 1181441 17068348 ~ 17069433 (-) True G137967

Expression Profile