RNA id: TU156463


Basic Information

Item Value
RNA id TU156463
length 281
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G137739
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 16624848 ~ 16625128 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCCCACTACTGGCGAAAACTTTGCAATGGGCTGAATTGGAACTTCCTAAGCCCTTGATCACTTGGAATCCGCAATGGAGCTGATTTATTATTTATTTTTTCCCTTTACAAAATTGTTTAATGCAGCATTCTATATGTATATAAGTGTGTTTTAAATATTTAAAAAAAATAATTTATATATCATAGAGTTGTTTGTGGTGGGGTAAATTAAACGCGATATGCGGTGACGTCACAATTGTGTTGCATTGTGGGTTATGGAGCTGCCTGAAGTGTACATATGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156447 lncRNA downstream 16148 16608495 ~ 16608700 (-) True G137723
TU156439 lncRNA downstream 26346 16598264 ~ 16598502 (-) True G137715
TU156406 lncRNA downstream 278507 16337879 ~ 16346341 (-) True G137682
TU156395 lncRNA downstream 330180 16293614 ~ 16294668 (-) True G137671
TU156346 lncRNA downstream 377007 16247638 ~ 16247841 (-) True G137640
TU156475 lncRNA upstream 9053 16634181 ~ 16634408 (-) True G137751
TU156377 lncRNA upstream 15609 16640737 ~ 16712136 (-) True G137664
TU156384 lncRNA upstream 98322 16723450 ~ 16724112 (-) True G137666
TU156385 lncRNA upstream 111049 16736177 ~ 16736221 (-) True G137666
TU156380 lncRNA upstream 134426 16759554 ~ 16761341 (-) True CI01000026_16756776_16760261
CI01000026_16553812_16554906.mRNA mRNA downstream 68965 16553382 ~ 16555883 (-) True CI01000026_16553812_16554906
CI01000026_16432592_16456842.mRNA mRNA downstream 168006 16432527 ~ 16456842 (-) True CI01000026_16432592_16456842
CI01000026_16297047_16419596.mRNA mRNA downstream 205109 16296642 ~ 16419739 (-) True CI01000026_16297047_16419596
CI01000026_15930136_15933539.mRNA mRNA downstream 691309 15929803 ~ 15933539 (-) True CI01000026_15930136_15933539
CI01000026_15780006_15782114.mRNA mRNA downstream 842573 15779650 ~ 15782275 (-) True CI01000026_15780006_15782114
CI01000026_16645459_16698069.mRNA mRNA upstream 20136 16645264 ~ 16698069 (-) False CI01000026_16645459_16698069
CI01000026_16739750_16751270.mRNA mRNA upstream 114120 16739248 ~ 16751270 (-) False CI01000026_16739750_16751270
CI01000026_16756776_16760261.mRNA mRNA upstream 131648 16756776 ~ 16760261 (-) False CI01000026_16756776_16760261
CI01000026_16817010_16832208.mRNA mRNA upstream 191167 16816295 ~ 16832208 (-) True CI01000026_16817010_16832208
CI01000026_16959659_16962519.mRNA mRNA upstream 334145 16959273 ~ 16963221 (-) True CI01000026_16959659_16962519
TU154700 other downstream 2069412 14554917 ~ 14555436 (-) True G136110
TU152172 other downstream 5317667 11301915 ~ 11307181 (-) True G133802
TU152150 other downstream 5787243 10834015 ~ 10837605 (-) False G133790
TU152144 other downstream 5834694 10790055 ~ 10790154 (-) True G133789
TU156370 other upstream 131601 16756729 ~ 16758327 (-) False CI01000026_16756776_16760261
TU156388 other upstream 181236 16806364 ~ 16808372 (-) True G137667
TU156657 other upstream 358123 16983251 ~ 16984352 (-) True G137914
TU156715 other upstream 443220 17068348 ~ 17069433 (-) True G137967

Expression Profile