RNA id: TU156670


Basic Information

Item Value
RNA id TU156670
length 690
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G137927
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 16956866 ~ 16957555 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGAGATAGCACTTCATGAAAATGGATTTTACTGACTGGTATAAAAATAAAAAAATAAAACTTTTTTTAGAGGTCAAATACAAAGACAAAAAAGTTTTCGATTTACATCGTCATCAGTGTTGTATATGTTGAACTTTGATATGGTTTTGAGCTTATGCACCAAAGTTATTTGTTTGTCTATAAATTTCTTCAGTAATTAGCACGTTTTACGGCCTTTTGGGCAGTTTTGGCTGTAATGGATTTTTACAGCAGAATCGAATGATACAGTATTTATTTCACATTTATAAAAATAGAACATTCACATTAGTGAATGAACATAAATACAAACCTGATTGAGAAGACAGAGCTAAGTGAAAAGTTGTTATACAGCTGAATTTAAACAGTTTTCACAAATATGTGGCTCTAAAAAGCTTAGTGATTCATAAACATAAGGAGCACACATTTTGTTCCTGTCAACAGTAATCATTTATAAACATTCATCAATTCATAACACTCCAAAATAACATCATAATATTCACATCTGCAATCCTAAAAATAAAGGTTCTTTATTGGCATTTTTGGTTCCACGAAGAACCTTTAACATTCATGGAAACTTTTAATTTCACAAAAGGTCTTAATAGAGGGAAAAGGCTATTTAGATTAGTAAAAATGCTCTTCACATTAAAGGATTAGTTCACTTTCAAATGAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156550 lncRNA downstream 49153 16907260 ~ 16907713 (-) True G137820
TU156533 lncRNA downstream 66788 16889674 ~ 16890078 (-) True G137806
TU156514 lncRNA downstream 92542 16864101 ~ 16864324 (-) True G137790
TU156507 lncRNA downstream 102009 16854625 ~ 16854857 (-) True G137783
TU156506 lncRNA downstream 102243 16854375 ~ 16854623 (-) True G137782
TU156671 lncRNA upstream 496 16958051 ~ 16958295 (-) True G137928
TU156706 lncRNA upstream 90713 17048268 ~ 17048478 (-) True G137958
TU156707 lncRNA upstream 91459 17049014 ~ 17049217 (-) True G137959
TU156710 lncRNA upstream 102314 17059869 ~ 17060072 (-) True G137962
TU156714 lncRNA upstream 109460 17067015 ~ 17067519 (-) True G137966
CI01000026_16817010_16832208.mRNA mRNA downstream 124658 16816295 ~ 16832208 (-) True CI01000026_16817010_16832208
CI01000026_16756776_16760261.mRNA mRNA downstream 196605 16756776 ~ 16760261 (-) False CI01000026_16756776_16760261
CI01000026_16739750_16751270.mRNA mRNA downstream 205596 16739248 ~ 16751270 (-) False CI01000026_16739750_16751270
CI01000026_16645459_16698069.mRNA mRNA downstream 258797 16645264 ~ 16698069 (-) False CI01000026_16645459_16698069
CI01000026_16553812_16554906.mRNA mRNA downstream 400983 16553382 ~ 16555883 (-) True CI01000026_16553812_16554906
CI01000026_16959659_16962519.mRNA mRNA upstream 1718 16959273 ~ 16963221 (-) True CI01000026_16959659_16962519
CI01000026_16988458_16994714.mRNA mRNA upstream 30261 16987816 ~ 16995104 (-) True CI01000026_16988458_16994714
CI01000026_17021405_17034147.mRNA mRNA upstream 62962 17020517 ~ 17034147 (-) True CI01000026_17021405_17034147
TU156388 other downstream 148494 16806364 ~ 16808372 (-) True G137667
TU156370 other downstream 198539 16756729 ~ 16758327 (-) False CI01000026_16756776_16760261
TU154700 other downstream 2401430 14554917 ~ 14555436 (-) True G136110
TU152172 other downstream 5649685 11301915 ~ 11307181 (-) True G133802
TU152150 other downstream 6119261 10834015 ~ 10837605 (-) False G133790
TU156657 other upstream 25696 16983251 ~ 16984352 (-) True G137914
TU156715 other upstream 110793 17068348 ~ 17069433 (-) True G137967

Expression Profile