RNA id: CI01000027_00250077_00273130.mRNA



Basic Information


Item Value
RNA id CI01000027_00250077_00273130.mRNA
length 1886
RNA type mRNA
GC content 0.50
exon number 10
gene id CI01000027_00250077_00273130
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 249756 ~ 273130 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACATAAAAATAATAACATTAGCATGTAAAACAATGACAGTAGCTCTTGTGTTTGGCTGTTGGGTAATGCTTGTTATGATCTGCTTCTCCGGAGGGCCATATTTCATCCAGCGGGCTGCCATAAGGCACTACTGCGTAAAATAGTTATTGTGTTTTGCCTCTCTAGAGGGTTCCCCCCTAATTGACTGCTTGAAATATGAAGTTCATGGAGAACCATGTGGTTCATTGTTGCGTTTGTCCTCTTCTAGAGATGAGATATAGTCCTGATGCAGATGTGAGAAGAGGACCTTGTTGTGCCTGTTGGTGCATCATATAATGAAGGATGAGCGAATCCCTTTCCATTTTGGCGAGCCATCCCGGCTCCGAGCGCTCGCGCCGCTTACGTCCTTCTTATTCTGATGTTGTTTCAGTGCAAGTCATATTGAAAGTTCCTACAGCGCGCACCTCGTCAGTCCCATGGGATTCTCCTCACGGACTGTCTTCATGCTCAGGCTCCGGCCCGTTCTCTTTCAGAGATAGCCCATGCCTTCTTGCTGGCGTCTCATTGAAGAATGTGCTTTTACAACCACCGACTGTTAAATCCATGCTAGATCTATTGGGGTCTATTATTGCTGTGGACACCAGATTTCTCAGCTTCATCCGGTATTGGCAGACCTTGCCGGGTGGAGGCAGTGGCGCAGTAGATTGCCACGACGGGAGGCATCTTGTTATTCCAAATGGAAGACTGGTGGGTGTCAGAGGGCCCAGTGTTGACCTTTGTTGGTTGAACGTGCACAGTGGTGGTTTTAAATCATCTGGTTTAATCTTTTTTGGGTTAAAGCTGGCGTTTCGGATTGGCCATTTTGCAGTACCATCACGCAGGCTGCACAGCCGTATCAAATTAGAGAATTGCAGCTTTGGAAGGCTGAGACGCATGCATAATGCAGATCTCTATCCGTTTGATTGTCACTGCTGCGGCCTGAAGGAGCCGTGGCATTGTCTTTCGGTTATTGCTATTGGAGTGCCTGCAATCGACCATCTATGCAAATTCTCCAAGGATTCGAATGTTCTCCTATCTGACATGATCAGGAACATCTTTCCTCGCTGTGGCTCCTCGGCTGGTTCTTGCACTACGTTCTTTAAAACGTCGCCCCCCTCGTGCATTCGCTTGGAGGAAGCCAACCAAGAGTTTCGGAACAAATTACATCTCGCTGTCTCATTCATATTCACCGTCGCCTGTCAGGACCTAGCGGTGATGAATTTAGTTGTTAGGCCTGCTCGGGGACCGATCGCTGGATACGGAGGCTGCCAGTCACCTGCCATCAGAGGAGTCGATTGGGATGGGCGTGGAATAGCAAAAGGAAAGGTTTCGCCTGTGCGGCGTTCCGCACGATTGGTGGAAGTGCTCTTCTCGGAGGAATATCATCATCTGCAGAGTGCTGAGAGTGCTGCTTGCAGCGTATGTGACGTTCACGCTGCTCCAGCTGAAATTCAATACCAGATGGAGATGATGAGGAGTCTCCGGCATGTGAACATCGACCATCTCCACGTCGGCTGGTATCAGTCCACGTACTACGGCTCTTTTGTCAGCCGAGCCCTGCTGGACTCGCAGTTCAGCTACCAGCATGCTATCGAAGAGTCTGTGGTGCTTATTTATGATCCCATAAAGACTGCGCAGGGCTCTCTGTGTCTGAAGGCCTACAGGTTGACCCCCAAATTAATGGAGATCTGCAAGGAGAAAGACTTCTCTCCGGAGGGGCTGAAGAAGGCCTGCGTCGGCTTCGAGCACATGTTCGAGGAAGTCCCCATTGTCATCAAGAACTCTCATCTCATAAACGTGCTCATGTGGGAGCTGCAAGAGAAGAGTACGGTGGCTGACAAGCACGAGCTGCTCAATCTGTCAAGCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU156899 lncRNA upstream 2174 245883 ~ 247582 (+) True G138115
TU156898 lncRNA upstream 4448 244016 ~ 245308 (+) True G138114
TU156837 lncRNA upstream 8971 238874 ~ 240785 (+) True CI01000027_00238851_00240657
TU156891 lncRNA upstream 31126 218387 ~ 218630 (+) True G138107
TU156890 lncRNA upstream 31412 218123 ~ 218344 (+) True G138106
TU156941 lncRNA downstream 370491 643621 ~ 645451 (+) True G138155
TU156993 lncRNA downstream 377059 650189 ~ 742852 (+) False G138200
TU157002 lncRNA downstream 400521 673651 ~ 718459 (+) False G138207
TU157003 lncRNA downstream 400521 673651 ~ 718459 (+) False G138207
TU157004 lncRNA downstream 400521 673651 ~ 718459 (+) False G138207
CI01000027_00238851_00240657.mRNA mRNA upstream 8765 238851 ~ 240991 (+) False CI01000027_00238851_00240657
CI01000027_00229612_00237058.mRNA mRNA upstream 11997 229005 ~ 237759 (+) True CI01000027_00229612_00237058
CI01000027_00122108_00124986.mRNA mRNA upstream 124770 122024 ~ 124986 (+) True CI01000027_00122108_00124986
CI01000027_00089337_00092919.mRNA mRNA upstream 156671 88779 ~ 93085 (+) False CI01000027_00089337_00092919
CI01000027_00000579_00037786.mRNA mRNA upstream 211904 579 ~ 37852 (+) True CI01000027_00000579_00037786
CI01000027_00365674_00371897.mRNA mRNA downstream 91860 364990 ~ 371996 (+) True CI01000027_00365674_00371897
CI01000027_00391159_00499309.mRNA mRNA downstream 117553 390683 ~ 499760 (+) False CI01000027_00391159_00499309
CI01000027_00505199_00523652.mRNA mRNA downstream 231140 504270 ~ 523652 (+) True CI01000027_00505199_00523652
CI01000027_00527282_00534071.mRNA mRNA downstream 253737 526867 ~ 535055 (+) True CI01000027_00527282_00534071
CI01000027_00637372_00642483.mRNA mRNA downstream 364242 637372 ~ 642642 (+) True CI01000027_00637372_00642483
TU156795 other upstream 149499 39146 ~ 100257 (+) True G138030
TU156938 other downstream 145164 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU157051 other downstream 556644 829774 ~ 831683 (+) True G138238
TU157065 other downstream 582258 855388 ~ 869575 (+) False G138247
TU157117 other downstream 722840 995970 ~ 999181 (+) True G138290
TU157281 other downstream 1233831 1506961 ~ 1507816 (+) True G138436

Expression Profile