RNA id: TU156938


Basic Information

Item Value
RNA id TU156938
length 2832
RNA type TUCP
GC content 0.42
exon number 4
gene id CI01000027_00391159_00499309
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 390683 ~ 499760 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTAACCCAGCTATTGGGTAGTTTTACTGAGCGATTGGGTTGTTTTAGCCCAGCGATTGGGTAGTTTTAACTCAGCTATTGGGTAGTTTTAACCATTTCTAGTCATTTTTAAATAGTTGGGTTAAATAAAACTACCCAGCACATTGGGCAAACATTTAACCCAATCGCTGTGTTTGTCCATTTTCAACCCAATTTGGGTTGTTTTTAACCCAACATTTTTTAGAGTGTAGCATATTAGAAAGGTTATGCTATTAGGGTTAAGGCCTTTACACACTGAGTCCGAAATTCGCATGCGAAACTTTCGCACGTAAAAAAATAAATTCGACCTCACGTTGTGTCAATCACGTTTGCACACTGGCCCGAAACTTTCGTCCGTCATAAAAATATTCAGATCAGGTTCGATTTTCTGCGTTTTTCACATCCGCGGCACGCATTTTGAGAGACGTTTTGACAATTCAGAGCCACCGTACGCGAACGCCAAAATCCAGAATGCCATCTGACAAGTTGATCCACGTCGTCTACAGCACAGAGCAGCAGCACTGAATGACAAACAACATGCGGAAAGAGACAGAATATAAAGACAGATTGTGCCAGTAGCAAAGCATCAAACTGAGCCACTGACATCCTGAAGTAAACTTTGAAACACTCGGGATAATCCCGCAGCTCCTTGATGAGGTGAACTCTCTTTTCTCTCTATGCAATCTCGGGATTGGATGGACCCAATATTTCCTCTTTCTTTTTCTCTTTTTAAGAAGAGAAAGGACAACTAAATCATGCTCACTGCTTGAAGACTTCATTTTGTATTGTTTTGCGATTTTTTATTTTTTATGTTTTATTTTTTGCAACGGATTCATTAATACACATCAGACTCAGTGTGCAAGGTCTCTGTGCGTGACAAATTTTTATGATTACGAATACGAAAAAACACATGCAAAAATTTTGGACTCAGTGTGCAAAGGCCTTTAGGGTATATTTTGTTTTAGGGTTAGTTGCATGTAATTATGCATAATTTATAGTTATTACTAAAGTAACTATATGTGACATATGTAACAATGACTCTGTAAAATAAAGTGTTACCAAATATCTTTTTGACCCCAAACTTTTGAATGGTACTGTTATAGGAATGGCTTATTGACCAAAATCTTGTTTTATACAGTATCCAGATTTCTATAAACACAATTTTGTTCATGTGGCAAATTACAACATTTTTTTGGGGTGAGAATCGTGTTTGTCAACCATAAACAAGCAATATTTATCCAGCTCTTAAAATACCATGATTCTAGTTCCAAAAAAAACCCAAGATTTCTTTTTGGTATATTTTATTGTGTAACGTATTATTTCTGCTCGTTCAAGCAGAAGCCGAGAAGCTTTAAGATCCTCTCTCTAGGTCTGCAGCATGTCATGCGTAATTACGGCTGGTAATGTAGTTGCTCTAATGTCATAAAAGCTCTTCGCTGGTTAATTTCTTTCAGATGTGCATCCCTGTTAATTGTTTAATATTCCGTTGATGTTATTCCGCCGGTGATTTTGCATCTACTCCTTCAAAGCCTGTGATTCATAAAGCACGAACAATGCCACATATTTGTAATCCTCTCGCTTGCCATTTAGCGAACGGATCAAAGGAAATTAGAGCATCCAACGAAACAGAAATCTGCATTTTGATTAATTGAGCTTAGCTTGACTTACAGGTCCCTCACCCACAGAAGGAGAGAGAATGTCAAATCTGTGAAGCGAACGGCTTTAGGGGACACGCAGGTGGTTGGATTTCACTCCAGCGGAGTCTTAATTACTCAACTGAGACGGCCATCCTAACCTGGATTCAGACCCGAGCCTCACGCGCTGCCAGCAGATGCCCGATCACTATCTATATGGAAATGATTTGTACACTCCAAAGTCCGAAGTGATGAAACGCCGAACCCAATGATTCATTTCGCCCCCGACAATGTAGCACTCCAAACACTTAATTACAAGCGGATCAAATTTTTATGAGCCTCTATTTCACAGTGTCTGCATCACGCATTGGGAAATATGAATTGTGAGTGAATTATCGAGTCATATTCAGGACCTCAGTCTGCTGCCAAACACCTCTTTCTAAACGCTTCCCTTAATGGGGACCTATTATGTCTTGATGTTGTTTTTGGGCTCTGTTAGAAGAGATTTGCATGCATTATTTTCCTCATATTCTCCATTGTTGCAGCTCCTCTCTTCCCAGTCTGTCAGTAACGCTCTATTTAGTTCCTGTCTCTATGAAGCCCCTCCTTCTGAAAAGCACAATGTGCTCTGATTGGTCAGCTGGAGCAGTGTGTTGTGATTGGTCAAGCGCTTCGAGCGTGTTTGGGAGATGGTTTCAGGTTGGTTTATGTCTCCGTATGCGCTCTCCTCCCGCAGTGAATGAAGGCATGGTCAAGCAGGTCTCCAATTTCTGCCCAGACCCCGGGGAACCGGAGAACGGCAAACGCATTGGCACCGATTACAGCATCGGTGCAACGGTTCGGTTCACGTGTGACGGGGATCACGTGCTTCAGGGATCCAAGAGCATCACGTGTCAGAGGGTGGCGGAGGTGTTTGCGGCCTGGAGCGACCACAGACCCGTCTGTAAAGTGAAAACATGTGGGATGAACCTCTTCGGTCCTTCAGGAACGTTTACATCGCCAAATTTCCCCATCCAATATGAGAGTAACTCACAGTGTGTTTGGATTATCACCGCCAGTAACCCCAATAAGGTTATTCAAATCAATTTTGAAGAGTTCGACTTAGAGCTTGGGTACGATACGCTGACTGTCGGAGACGGCGGAGAGGTCGGCGACTCGAAAACAATCATACAAGTGTA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17495 CSMD; CUB and sushi domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156899 lncRNA upstream 170712 245883 ~ 247582 (+) True G138115
TU156898 lncRNA upstream 172986 244016 ~ 245308 (+) True G138114
TU156837 lncRNA upstream 177509 238874 ~ 240785 (+) True CI01000027_00238851_00240657
TU156891 lncRNA upstream 199664 218387 ~ 218630 (+) True G138107
TU156890 lncRNA upstream 199950 218123 ~ 218344 (+) True G138106
TU156941 lncRNA downstream 214945 643621 ~ 645451 (+) True G138155
TU156993 lncRNA downstream 221513 650189 ~ 742852 (+) False G138200
TU157002 lncRNA downstream 244975 673651 ~ 718459 (+) False G138207
TU157003 lncRNA downstream 244975 673651 ~ 718459 (+) False G138207
TU157004 lncRNA downstream 244975 673651 ~ 718459 (+) False G138207
CI01000027_00365674_00371897.mRNA mRNA upstream 46298 364990 ~ 371996 (+) True CI01000027_00365674_00371897
CI01000027_00250077_00273130.mRNA mRNA upstream 145164 249756 ~ 273130 (+) True CI01000027_00250077_00273130
CI01000027_00238851_00240657.mRNA mRNA upstream 177303 238851 ~ 240991 (+) False CI01000027_00238851_00240657
CI01000027_00229612_00237058.mRNA mRNA upstream 180535 229005 ~ 237759 (+) True CI01000027_00229612_00237058
CI01000027_00122108_00124986.mRNA mRNA upstream 293308 122024 ~ 124986 (+) True CI01000027_00122108_00124986
CI01000027_00505199_00523652.mRNA mRNA downstream 75594 504270 ~ 523652 (+) True CI01000027_00505199_00523652
CI01000027_00527282_00534071.mRNA mRNA downstream 98191 526867 ~ 535055 (+) True CI01000027_00527282_00534071
CI01000027_00637372_00642483.mRNA mRNA downstream 208696 637372 ~ 642642 (+) True CI01000027_00637372_00642483
CI01000027_00681087_00701456.mRNA mRNA downstream 252411 681087 ~ 701547 (+) False CI01000027_00681087_00701456
CI01000027_00738809_00739296.mRNA mRNA downstream 309328 738004 ~ 740394 (+) True CI01000027_00738809_00739296
TU156795 other upstream 318037 39146 ~ 100257 (+) True G138030
TU157051 other downstream 401098 829774 ~ 831683 (+) True G138238
TU157065 other downstream 426712 855388 ~ 869575 (+) False G138247
TU157117 other downstream 567294 995970 ~ 999181 (+) True G138290
TU157281 other downstream 1078285 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 1235732 1664408 ~ 1676860 (+) False G138515

Expression Profile