RNA id: CI01000027_00527282_00534071.mRNA



Basic Information


Item Value
RNA id CI01000027_00527282_00534071.mRNA
length 2164
RNA type mRNA
GC content 0.44
exon number 5
gene id CI01000027_00527282_00534071
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 526867 ~ 535055 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCATAAAGAAGGTGAGATGGCTTCATGTATACGGACCACCTCGGTCTAAATTCTCCATGCGGTTAAGGCTGCAAGTGTAATCTATTCGTCACAACCTCTTTAGCGCAGAACGTCAGCGGTCACTCGACAAATAGCCCATCATCGAGATTCCAGAGTGGCTCGAGAGCGTCGCTCTGCTTGATTTAGGTCACCGCCGGTTCACAAAACTGCAATAGGTCTGATCTGTCTTGTTGTGTGGCCAGCTGTGGTTTCAGTATGATTAGGTGGACGGCAGCGAGGTGTGACCCAACTTTAACAGCGACGGCACTTCATCAGTAGACTCGATGAAGCTGCTGACAGTCATGACAGAGTTGAATGACATCCGTTGAAGACTCATGACGGAATGTCATAATGCCACCAGGAGCTGTAGGGAACAATGCGCTGTTATGCCTGTCATGCAAACCAAAATGTTCTAATGCAAATCCCTTTAGGGACCACGATTCCACCCCTGCTGAACACCACGTCCAACAACCTCTACCTCACCTTTCAGACTGACATGAGCGTTTCTGGAGCTGGTTTTCACCTGGAATACACAGCAATAGGTTTGGACTCCTGCCCAGAACCTCAAACCCCCAGCAATGGTGTGAAGGTGGGCGACCGCTACTTCGTGGGTGATGTTGTCTCATTCCACTGTGAGCAAGGATACACTCTAAAGGGAAGTGCATATATAACGTGCATGCCGGGGCCTGTCAGACGCTGGAACTACCCCGCGCCCCTCTGTCTGGCTCAGTGCGGCGGCTTCCTGTCCGACATGAATGGAGTCATCCTAAGTCCTGGCTTTCCCGGAAATTACCCCAGTGGCCTCGACTGCAACTGGACAGTTAAACTTCCTGTTGGCTTTGGGATTCACCTGCAATTTCTCAACTTCTCCACGGAGGCCGTGCACGACTACCTTGAAGTCCGTAGCGGGACGCTGGACTCGGGTTCGGTGATCGATCGGTTCAGTGGGCCTGTTGTTCCAGAATCGTTCTTCAGCACGACCCACGAGACCAGCTTCTTCTTTCACAGCGACTACTCCCAGAACAAGCCCGGTTTCCACATCACCTACGAGGGTGAGACGGATCAGACCTGCCCACGGCCATTACTTCCCCTGTCGATACGGACACACACCGCTGGATCCCTTCTCGCAATAACAGGATAGGGAATATAACCAATTGTTCTCTTTCAGTTCTAAGCCCTGTTCAAAGCAAGTCAGTCAATCTTAGCAACATCCACAAGCATTTTCTAGCCAGCTCCAAAACATCCAGAATGCTCTCCAAATGCAAAACTCGGACGAGTTTGTGGGTCGCCTGAACGACTGATTGGTCTTAACGAAAATCCCTGTATAATTAAGTTGCTTTTGGGAATGTGTGCATCAGTAGCTGTGGTGCTTTAAAGGGTATGAATTTAAAGCTGCAGCTTTTCTGAGAGGATTTGACCATGCAAACAACTACGGCACAGCAGTAAAAGCTAGCACTAAAAATATAACAGCTTCAACAAGATTCAAATAGACCTCTAAATCTAAGTGTTAAACTCTTCCCTTTTGTGCTATGGACATGAATAATGCCTCTAATTGTTAATCTTTCTGAGGAGAGGTGTGCTTTTACTTTACTACACTCTAAAAAAAAAAAAATAATGTGTTGTCTCAACAAAAAAAAATTAAGTTTGCATCAATTTTTTTGAGTTATGAGTGAATTTACGCTCAACCAACAAGCTACATTGAGTTAGAGGAACTTAATAATTTGTAGTATAAACACAAATTTTTAAGCTGATTACTCAAAAAAATTAAGTCGCTCCAACTAGCCCTGGAACCAATTATGCTGCCTTCATGTGCTCTCGGATTTATCGTAAATACGAGTTTCCTAGGTAAAAATTGCACAACGCCTTCCCATTTTGAAACTTGAATGCGATAAGTTCGTAATCACGACTTCAGAAGTGGAAATTATCAAATTTCCCATAGCACGTGAAGACAGCATTAATCTTATGATTAACATTATTATGTTAACAGAACTCTACAAAATAATGTTTCCAACTTAAAAAGTTTAATTAAAACAATAAATTAGAATTTTTAAATTGCAACCATGGATTTAATTAAGTTGTGGTAATAGGTCCCCTGAATTACTTACTTATTTTAGAGTGTAAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU156899 lncRNA upstream 279285 245883 ~ 247582 (+) True G138115
TU156898 lncRNA upstream 281559 244016 ~ 245308 (+) True G138114
TU156837 lncRNA upstream 286082 238874 ~ 240785 (+) True CI01000027_00238851_00240657
TU156891 lncRNA upstream 308237 218387 ~ 218630 (+) True G138107
TU156890 lncRNA upstream 308523 218123 ~ 218344 (+) True G138106
TU156941 lncRNA downstream 108566 643621 ~ 645451 (+) True G138155
TU156993 lncRNA downstream 115134 650189 ~ 742852 (+) False G138200
TU157002 lncRNA downstream 138596 673651 ~ 718459 (+) False G138207
TU157003 lncRNA downstream 138596 673651 ~ 718459 (+) False G138207
TU157004 lncRNA downstream 138596 673651 ~ 718459 (+) False G138207
CI01000027_00505199_00523652.mRNA mRNA upstream 3215 504270 ~ 523652 (+) True CI01000027_00505199_00523652
CI01000027_00391159_00499309.mRNA mRNA upstream 27107 390683 ~ 499760 (+) False CI01000027_00391159_00499309
CI01000027_00365674_00371897.mRNA mRNA upstream 154871 364990 ~ 371996 (+) True CI01000027_00365674_00371897
CI01000027_00250077_00273130.mRNA mRNA upstream 253737 249756 ~ 273130 (+) True CI01000027_00250077_00273130
CI01000027_00238851_00240657.mRNA mRNA upstream 285876 238851 ~ 240991 (+) False CI01000027_00238851_00240657
CI01000027_00637372_00642483.mRNA mRNA downstream 102317 637372 ~ 642642 (+) True CI01000027_00637372_00642483
CI01000027_00681087_00701456.mRNA mRNA downstream 146032 681087 ~ 701547 (+) False CI01000027_00681087_00701456
CI01000027_00738809_00739296.mRNA mRNA downstream 202949 738004 ~ 740394 (+) True CI01000027_00738809_00739296
CI01000027_00765527_00776450.mRNA mRNA downstream 230412 765467 ~ 776763 (+) True CI01000027_00765527_00776450
CI01000027_00779517_00795032.mRNA mRNA downstream 243899 778954 ~ 795389 (+) True CI01000027_00779517_00795032
TU156938 other upstream 98191 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156795 other upstream 426610 39146 ~ 100257 (+) True G138030
TU157051 other downstream 294719 829774 ~ 831683 (+) True G138238
TU157065 other downstream 320333 855388 ~ 869575 (+) False G138247
TU157117 other downstream 460915 995970 ~ 999181 (+) True G138290
TU157281 other downstream 971906 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 1129353 1664408 ~ 1676860 (+) False G138515

Expression Profile