RNA id: CI01000027_00681087_00701456.mRNA



Basic Information


Item Value
RNA id CI01000027_00681087_00701456.mRNA
length 1723
RNA type mRNA
GC content 0.48
exon number 6
gene id CI01000027_00681087_00701456
representative False

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 681087 ~ 701956 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACTGTCTTCTGTTCTGGCATCTGGCCGCAGTTACCGACAGCCAAAAACGGAAAGAAAGATCTGCATGTGGTTTTGCTAGATCTTGCCAATGCCCTTGGGTCAGTGCTGCATGAGATGTTGTGGGCAGCATTCAATTTCTTTCATGTGCCAGAGAGCATAACACAGCTGGTCAAAGAGTACTTCCAGGATCTTCAGTTCGGTATCACAACACAGGACAGTACCACCGTCTGGCAGCAGCTTGAGATAATGGCGGGTTGCACCATTTCTCCACTTGCTTTTACGATGGCAATGGAGCTTATTATTCAAGCATCACGGTGGGTGGTTGGAGGAGAACGGTTGAGGAATGGGCTGTGTGTCCCTCCAGTAAGGGTGCACATGGATGACATGACAACAATCACAAAAACAAAAGCATGTACCAAACACCAGCTGGAAAAAATCCAGAGAAACATCCAATACATTTTAAATTCTGATGTTCTGGAGTTGGACGCCTCCCTGTCCTGTCCTGGCCGCAGAGATGAGACATANTCCCTGTCCTGTCCTGGCCGCAGAGATGATACATGTGCTCACTGGGATCACACTGTACAGCTGTACGTATGCTGCGATCAAACCAGCCCGTACTGCAATCTGGAGCTCGGACGCTGGATAACGGCCTTCCGCAGAGGCACAGGTCATTGGCTGACGGATGTGTCCCCTTTGATTCTCCTGGTAAATAACAATACCTTTACCATGAAGACTGTGCCATGGGCGATGCCATGGATGATATCTCCCAATCTACGCTTTAGTCACAGCAACCAGACAGATGAGCAGGCACAGTCCCTGTATTCCCATGTGCGTGTGTTGTGTTGGGTCATGACGAGGCCTGAAAATCTGCAGAAAAAGCTCCAGCACATTCGTGCCACCTGGGCTAAACACTGTAACCAGGTGCTGTACATGAGCTCGCAGAGCTCCGACTTCCCCACCGTGGGGCTCAATGTCAGCGAGGGCCGATCTCAGCTGTACTGGAAGACCATCCGTGCCTTTCAGTACCTCCATGCCCACCACCTCCAGCATGCCGACTGGTTCCTCAAAGCAGACGACGACACATTTGTGGTGGTTGAAAACCTGAGATACCTACTTTCCCATCATGACACTGAGGAGCCTGTTTATTTCGGCCACAAGTTCCGGCCGTTCGTACGTCAGGGTTACATGAGCGGAGGTGCCGGATACGTTCTGAGCCGAGAGGCTCTCAGGAGATTTGTGCAAGGTTTCAGCACAGGACGCTGCAAGCATTTCAGCTCCGTGGAGGACATGGCCTTAGGAAGGTGCATGGAGACCATGGGAGTGAAGGCCGGGGATTCAAGAGATCCAAACAAACGAGAAACATTTAATCCTTTTAGACCGGAAAACCACCTTATTCCCCCAGAGAATGGAAAACAGACCTGGGGCTACAGTTACTACAAAACCAGACGGGGCCCTGATTGCTGTGCGGATTTTGCGATATCGTTTCATTATGTGAAATCTGCAGACATGTACATGCTGGAGTATTTTGCACATCACCTCCGACCATTTGGATACAAGTACAGATTCAACACTATTCAACAAAACAGCACCAGTGAACTTAAACCACATTACAAATACAATAGACAAGAATAAAAAACACAAAGATGTTTTCATTAGAACATTTGATGGAAGAAGACAGATTACTGATTGTTTTTCTGCATGAATATTTGTTCATTGCCCATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157005 lncRNA upstream 6098 673651 ~ 674989 (+) True G138207
TU156941 lncRNA upstream 35636 643621 ~ 645451 (+) True G138155
TU156899 lncRNA upstream 433505 245883 ~ 247582 (+) True G138115
TU156898 lncRNA upstream 435779 244016 ~ 245308 (+) True G138114
TU156837 lncRNA upstream 440302 238874 ~ 240785 (+) True CI01000027_00238851_00240657
TU157034 lncRNA downstream 108110 809657 ~ 809941 (+) True G138229
TU157038 lncRNA downstream 113034 814581 ~ 814806 (+) True G138233
TU157039 lncRNA downstream 114447 815994 ~ 821269 (+) True G138234
TU157064 lncRNA downstream 157795 859342 ~ 883513 (+) False G138247
TU157066 lncRNA downstream 174822 876369 ~ 893121 (+) True G138247
CI01000027_00637372_00642483.mRNA mRNA upstream 38445 637372 ~ 642642 (+) True CI01000027_00637372_00642483
CI01000027_00527282_00534071.mRNA mRNA upstream 146032 526867 ~ 535055 (+) True CI01000027_00527282_00534071
CI01000027_00505199_00523652.mRNA mRNA upstream 157435 504270 ~ 523652 (+) True CI01000027_00505199_00523652
CI01000027_00391159_00499309.mRNA mRNA upstream 181327 390683 ~ 499760 (+) False CI01000027_00391159_00499309
CI01000027_00365674_00371897.mRNA mRNA upstream 309091 364990 ~ 371996 (+) True CI01000027_00365674_00371897
CI01000027_00738809_00739296.mRNA mRNA downstream 36457 738004 ~ 740394 (+) True CI01000027_00738809_00739296
CI01000027_00765527_00776450.mRNA mRNA downstream 63920 765467 ~ 776763 (+) True CI01000027_00765527_00776450
CI01000027_00779517_00795032.mRNA mRNA downstream 77407 778954 ~ 795389 (+) True CI01000027_00779517_00795032
CI01000027_00909268_00918831.mRNA mRNA downstream 206966 908513 ~ 919213 (+) True CI01000027_00909268_00918831
CI01000027_00949578_00953698.mRNA mRNA downstream 247174 948721 ~ 954281 (+) True CI01000027_00949578_00953698
TU156938 other upstream 252411 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156795 other upstream 580830 39146 ~ 100257 (+) True G138030
TU157051 other downstream 128227 829774 ~ 831683 (+) True G138238
TU157065 other downstream 153841 855388 ~ 869575 (+) False G138247
TU157117 other downstream 294423 995970 ~ 999181 (+) True G138290
TU157281 other downstream 805414 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 962861 1664408 ~ 1676860 (+) False G138515

Expression Profile