Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU157010 |
| length | 1235 |
| lncRNA type | sense_over |
| GC content | 0.39 |
| exon number | 4 |
| gene id | G138212 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 686349 ~ 691537 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU157005 | lncRNA | upstream | 11360 | 673651 ~ 674989 (+) | True | G138207 |
| TU156941 | lncRNA | upstream | 40898 | 643621 ~ 645451 (+) | True | G138155 |
| TU156899 | lncRNA | upstream | 438767 | 245883 ~ 247582 (+) | True | G138115 |
| TU156898 | lncRNA | upstream | 441041 | 244016 ~ 245308 (+) | True | G138114 |
| TU156837 | lncRNA | upstream | 445564 | 238874 ~ 240785 (+) | True | CI01000027_00238851_00240657 |
| TU156994 | lncRNA | downstream | 8315 | 699852 ~ 742852 (+) | True | G138200 |
| TU157034 | lncRNA | downstream | 118120 | 809657 ~ 809941 (+) | True | G138229 |
| TU157038 | lncRNA | downstream | 123044 | 814581 ~ 814806 (+) | True | G138233 |
| TU157039 | lncRNA | downstream | 124457 | 815994 ~ 821269 (+) | True | G138234 |
| TU157064 | lncRNA | downstream | 167805 | 859342 ~ 883513 (+) | False | G138247 |
| CI01000027_00637372_00642483.mRNA | mRNA | upstream | 43707 | 637372 ~ 642642 (+) | True | CI01000027_00637372_00642483 |
| CI01000027_00527282_00534071.mRNA | mRNA | upstream | 151294 | 526867 ~ 535055 (+) | True | CI01000027_00527282_00534071 |
| CI01000027_00505199_00523652.mRNA | mRNA | upstream | 162697 | 504270 ~ 523652 (+) | True | CI01000027_00505199_00523652 |
| CI01000027_00391159_00499309.mRNA | mRNA | upstream | 186589 | 390683 ~ 499760 (+) | False | CI01000027_00391159_00499309 |
| CI01000027_00365674_00371897.mRNA | mRNA | upstream | 314353 | 364990 ~ 371996 (+) | True | CI01000027_00365674_00371897 |
| CI01000027_00738809_00739296.mRNA | mRNA | downstream | 46467 | 738004 ~ 740394 (+) | True | CI01000027_00738809_00739296 |
| CI01000027_00765527_00776450.mRNA | mRNA | downstream | 73930 | 765467 ~ 776763 (+) | True | CI01000027_00765527_00776450 |
| CI01000027_00779517_00795032.mRNA | mRNA | downstream | 87417 | 778954 ~ 795389 (+) | True | CI01000027_00779517_00795032 |
| CI01000027_00909268_00918831.mRNA | mRNA | downstream | 216976 | 908513 ~ 919213 (+) | True | CI01000027_00909268_00918831 |
| CI01000027_00949578_00953698.mRNA | mRNA | downstream | 257184 | 948721 ~ 954281 (+) | True | CI01000027_00949578_00953698 |
| TU156938 | other | upstream | 257673 | 418294 ~ 428676 (+) | True | CI01000027_00391159_00499309 |
| TU156795 | other | upstream | 586092 | 39146 ~ 100257 (+) | True | G138030 |
| TU157051 | other | downstream | 138237 | 829774 ~ 831683 (+) | True | G138238 |
| TU157065 | other | downstream | 163851 | 855388 ~ 869575 (+) | False | G138247 |
| TU157117 | other | downstream | 304433 | 995970 ~ 999181 (+) | True | G138290 |
| TU157281 | other | downstream | 815424 | 1506961 ~ 1507816 (+) | True | G138436 |
| TU157376 | other | downstream | 972871 | 1664408 ~ 1676860 (+) | False | G138515 |
