RNA id: TU156993


Basic Information

Item Value
RNA id TU156993
length 137
lncRNA type read_through
GC content 0.30
exon number 2
gene id G138200
representative False

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 650189 ~ 742852 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAGGACTTTTATTTACATTAGATTGCAGAAAATAAAAGTTCTTTTGGTTTTTAGATATAGCATAAACACTTACTGAGATTAAAATCACAGATTTTTTTTAATGTAAATAATTCTGACAAAATATTTTGTTATTTTAACTTTATAATTTCAGTTTGTCACTACAGTTACAATTACTGTACAACAAATGTTCCTTTTATACTTTTACTATTTTTAAACTGTAAAAATGTCTCTTTACTCAGCATCATAATAGAGTGGTATTGTCATGCTCAAAGAAAATGTTAAAATTAAAGTAATTGTAAATATTAATGATTCCCACTATAGTTAAAATGTGTTTTAAAACAAATATGGATTTCTGTAGGACTTGTGTATATTGAAGTTTAACTTTTGCATAATGACTGTTTTGCAAGATAAAAATTAATGATTTTTCTCTTCTTCCAGGGCCCTGATTGCTGTGCGGATTTTGCGATATCGTTTCATTATGTGAAATCTGCAGACATGTACATGCTGGAGTATTTTGCACATCACCTCCGACCATTTGGATACAAGTACAGATTCAACACTATTCAACAAAACAGCACCAGTGAACTTAAACCACATTACAAATACAATAGACAAGAATAAAAAACACAAAGATGTTTTCATTAGAACATTTGATGGAAGAAGACAGATTACTGATTGTTTTTCTGCATGAATATTTGTTCATTGCCCATGAAGAAAGAGTTTTTTGTTGGTTTGCTCAAAATAATGTCTGAATGTCACTGCATTAGATGACAACATATCAAACTACTTTTAATTTTTCTGAGCCATGTCTTCTATATTTCTTTCAAATGAAAGCTGCTGTTTGATATTTTGCTATATAATGCAGTCTCAATTCGACATTTTAAGTGTACCAAATACTTTTAGTGGCCATTATTTATGCAAATACATCCATTTATTTAATTGTTCAAGTTCTTCTGAGCAGTTTAGTTATTTAAAATGTTCATAGTTAAATATTAAAAGTTAAAATATTTTTAAATACTAAATGGTCCATTAGCTTTATTTCTTTCTCTCTTTTTTTAGTATCCCGTCCTTTTGCATCAGTTTCAGCGCTCTAATGATAAGACACACAGGATTTTCTGCAGGTCTGTTCACTATCAAATCGGTTTTTGTTGCCATTGCAACCTCCAAACCAGAACTGAGCACATGAATTGGCGTTAGGATCAAAATACCATTTAACAACATACTGTCGACATGGACCGGGATCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156941 lncRNA upstream 4738 643621 ~ 645451 (+) True G138155
TU156899 lncRNA upstream 402607 245883 ~ 247582 (+) True G138115
TU156898 lncRNA upstream 404881 244016 ~ 245308 (+) True G138114
TU156837 lncRNA upstream 409404 238874 ~ 240785 (+) True CI01000027_00238851_00240657
TU156891 lncRNA upstream 431559 218387 ~ 218630 (+) True G138107
TU157034 lncRNA downstream 66805 809657 ~ 809941 (+) True G138229
TU157038 lncRNA downstream 71729 814581 ~ 814806 (+) True G138233
TU157039 lncRNA downstream 73142 815994 ~ 821269 (+) True G138234
TU157064 lncRNA downstream 116490 859342 ~ 883513 (+) False G138247
TU157066 lncRNA downstream 133517 876369 ~ 893121 (+) True G138247
CI01000027_00637372_00642483.mRNA mRNA upstream 7547 637372 ~ 642642 (+) True CI01000027_00637372_00642483
CI01000027_00527282_00534071.mRNA mRNA upstream 115134 526867 ~ 535055 (+) True CI01000027_00527282_00534071
CI01000027_00505199_00523652.mRNA mRNA upstream 126537 504270 ~ 523652 (+) True CI01000027_00505199_00523652
CI01000027_00391159_00499309.mRNA mRNA upstream 150429 390683 ~ 499760 (+) False CI01000027_00391159_00499309
CI01000027_00365674_00371897.mRNA mRNA upstream 278193 364990 ~ 371996 (+) True CI01000027_00365674_00371897
CI01000027_00765527_00776450.mRNA mRNA downstream 22615 765467 ~ 776763 (+) True CI01000027_00765527_00776450
CI01000027_00779517_00795032.mRNA mRNA downstream 36102 778954 ~ 795389 (+) True CI01000027_00779517_00795032
CI01000027_00909268_00918831.mRNA mRNA downstream 165661 908513 ~ 919213 (+) True CI01000027_00909268_00918831
CI01000027_00949578_00953698.mRNA mRNA downstream 205869 948721 ~ 954281 (+) True CI01000027_00949578_00953698
CI01000027_00980123_00987611.mRNA mRNA downstream 236303 979155 ~ 987884 (+) True CI01000027_00980123_00987611
TU156938 other upstream 221513 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156795 other upstream 549932 39146 ~ 100257 (+) True G138030
TU157051 other downstream 86922 829774 ~ 831683 (+) True G138238
TU157065 other downstream 112536 855388 ~ 869575 (+) False G138247
TU157117 other downstream 253118 995970 ~ 999181 (+) True G138290
TU157281 other downstream 764109 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 921556 1664408 ~ 1676860 (+) False G138515

Expression Profile