RNA id: CI01000027_00738809_00739296.mRNA


Basic Information

Item Value
RNA id CI01000027_00738809_00739296.mRNA
length 2296
RNA type mRNA
GC content 0.43
exon number 2
gene id CI01000027_00738809_00739296
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 738004 ~ 740394 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATATATGTACCCTAAGCCCCTCAGGTGCCTTAGTTATGGGATTGAGTGGATGACTAAAAGTATTTCAGTACCCCGTTGCCTGGGCTACCCTGGGCTACCCTCGTGTCTGTTACGCGCCCTTTTTTCAAGTGCTCTGCTCTGATGCTCGGTCGTCCCCCTACGTAGCACGGCGTGATTATACTGTCCCCATAGCATCTTGTCTTATTAATAATCTATATTAATTAATAAGATGAACGACACAGTACTCGTGTAGTATCGCAAGGGAACGTACTCGGTTACTAACGTAACCTCGGTTCCCTTAGATACGGAACGAATACTGCGTTCCTTGCCGCGCTACACGCGAGACGCCTCATGCCGTCGCTTCAGTCGAATATAATCGATTTGCCATGGTGAGACAGCCGCTTATAGCCTGAGACCCCGCCCCTTTTGGCGGGCTCGAGTGGGCTCGCTCACCATTGGCTTGTGCGTTCCGCGCCGTCATTGGTTCATTTTCTTAATTTTTACGAACCAATGCACGAGCAGTTAACACTGCGTGATTGTATAAAGGCTTCAGAATCGGAGAAAAATAAGTTTTCCCCATAGCGTCTTGTTTTATTAATAATCTGTATTAATTAAGACGAACGACGTAGTACTCGTTCTGTATCTAAAGGAAACGAGGTTACGTTGGTAACCGAGTACGTTTTTGTAACATTTTAAAAGTCTTTACTGTCACTTTTAATCAAATTAATTCAAACTTCTGCTTGAATTTCCCAGATGAGCGGGCACAGTCCCTGTATTCCCATGTGCGTGTGTTGTGTTGGGTCATGACGAGGCCTGAAAATCTGCAGAAAAAGCTCCAGCACATTCGTGCCACCTGGGCTAAACACTGTAACCAGGTGCTGTACATGAGCTCGCAGAGCTCCGACTTCCCCACCGTGGGGCTCAACGTCAGCGAGGGCCGATCTCAGCTGTACTGGAAGACCATGCCAGCATGCCGACTGCCACAAGTTCCGGCCGTTCGTACATCAGGGTTACATGAGCGGAGGTGCCGGATACGTTCTGAGCCGAGAGGCTCTCAGGAGATTTGTGCAAGGTTTCAGCCTGGGACGCTGCAAGCATTTCAGCTCCGTGGAGGACATGGCCTTGGGAAGGTGCATGGAGACCATGGGAGTGAAGGCTGGGGATTCAAGAGACCCAAACAAACGAGAAACATTTAATCCTTTTAGACCGGAAAACCATCTCATTCCCCCAAAGAATGGAAAACAGACCTGGGGCTACAGTTACTACAAAACCAGACGGATGAATGCAGCTGGCAGTTTTTCATTGAAAATATTTGTGAGTCATTCTACAGTTAAACCTAAGCTCTGCCCTCCTTGATTACTGTTGCTAATACTGTGTAACACTGGGTAAGACGCAACAAAAGACAATAGAGTGCAACAGCCCGCCCTCTTTTTCAGCGGCATTGGTTCCTTTCATTTCTCCCATAGGGATTTCAAAAAAGTCTTCATTACTGCATTATAAGCCATGAACCAAGCTAATCAGCCATGAGATGAATAATAACATTACAAACTTTGATTTGAAGCAAAACAGTTTTTAAAATTAGACAAAGGTACAAGACTGTACTTAACGTTTTTAGTGAGGGAGAAAAAACTACAATCCCATGAAGCATTGAGAAAAGCATAATCAAATTAAAAATGTTGATTAATATATATAAACTTAAAGGCCCGCTGAAGTGTCTTGGAACGCGCAGAATTATTCAATGTGTTGACGTAATTTCAACTGTAACAGGAAGACAGACTGTGCTCGCGCTGCGGCGGTTCACGATATACTAATGCGAAAACGGACTTCATTCGCGTCAATGGAAACCATATTTACACTGTCTGAATCGTTCTCTATCCCCTATATAGTGCACTATGTGCCATTCACCATGTAGAAACTAGTAAACGTGTGAACAAATGACCAATTTCAGCCACAGCTTCAGTGTCTGTTGATAGTGTAGGAGGGGCGAAACTTCAGATTCCAGAGAGAATTTGATTGGACAGAAGATTTGATGAGAAGCTGAAGTACGATGTGATGTCATGAAAATCCGTGATCCATTTTAGCGGAAGTGAGAGACTAAGTTTTGAATGCTAATATCTCCTAAATTCGAATTTTGTCATTGTTTTGGAACTTACCAGCTTATTCATAATATTAAGGCTAACATATTCATACTAAAATCTAAAAAACTTACATTTGATTTCAGGGGGACTTGAAAATTTAATTATAATCCTTGACAAAGAAGTTGTAACAATGATGTATTACTACTTTTATGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157002 lncRNA upstream 19545 673651 ~ 718459 (+) False G138207
TU157003 lncRNA upstream 19545 673651 ~ 718459 (+) False G138207
TU157004 lncRNA upstream 19545 673651 ~ 718459 (+) False G138207
TU157010 lncRNA upstream 46467 686349 ~ 691537 (+) True G138212
TU157005 lncRNA upstream 63015 673651 ~ 674989 (+) True G138207
TU157034 lncRNA downstream 69263 809657 ~ 809941 (+) True G138229
TU157038 lncRNA downstream 74187 814581 ~ 814806 (+) True G138233
TU157039 lncRNA downstream 75600 815994 ~ 821269 (+) True G138234
TU157064 lncRNA downstream 118948 859342 ~ 883513 (+) False G138247
TU157066 lncRNA downstream 135975 876369 ~ 893121 (+) True G138247
CI01000027_00681087_00701456.mRNA mRNA upstream 36457 681087 ~ 701547 (+) False CI01000027_00681087_00701456
CI01000027_00637372_00642483.mRNA mRNA upstream 95362 637372 ~ 642642 (+) True CI01000027_00637372_00642483
CI01000027_00527282_00534071.mRNA mRNA upstream 202949 526867 ~ 535055 (+) True CI01000027_00527282_00534071
CI01000027_00505199_00523652.mRNA mRNA upstream 214352 504270 ~ 523652 (+) True CI01000027_00505199_00523652
CI01000027_00391159_00499309.mRNA mRNA upstream 238244 390683 ~ 499760 (+) False CI01000027_00391159_00499309
CI01000027_00765527_00776450.mRNA mRNA downstream 25073 765467 ~ 776763 (+) True CI01000027_00765527_00776450
CI01000027_00779517_00795032.mRNA mRNA downstream 38560 778954 ~ 795389 (+) True CI01000027_00779517_00795032
CI01000027_00909268_00918831.mRNA mRNA downstream 168119 908513 ~ 919213 (+) True CI01000027_00909268_00918831
CI01000027_00949578_00953698.mRNA mRNA downstream 208327 948721 ~ 954281 (+) True CI01000027_00949578_00953698
CI01000027_00980123_00987611.mRNA mRNA downstream 238761 979155 ~ 987884 (+) True CI01000027_00980123_00987611
TU156938 other upstream 309328 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156795 other upstream 637747 39146 ~ 100257 (+) True G138030
TU157051 other downstream 89380 829774 ~ 831683 (+) True G138238
TU157065 other downstream 114994 855388 ~ 869575 (+) False G138247
TU157117 other downstream 255576 995970 ~ 999181 (+) True G138290
TU157281 other downstream 766567 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 924014 1664408 ~ 1676860 (+) False G138515

Expression Profile