RNA id: CI01000027_00779517_00795032.mRNA



Basic Information


Item Value
RNA id CI01000027_00779517_00795032.mRNA
length 1946
RNA type mRNA
GC content 0.47
exon number 8
gene id CI01000027_00779517_00795032
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 778954 ~ 795389 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACATAAAAAAAAAAAAAAACATTCCTCATCTCCAAAGCAGAGTGCTTATTTTTCCATGCAACGCTTAACTCCGCCCCCCGCAGGAAATGCAGTGATCTCATTGGCTCTTTGCGGTAAGAAGGAACGTATAACCCAATAATGATCGAACATCGCTGAGCTCCAATCAGATGCAGCACGCACGCGTCTTCCGCCCGCCCACTGCCTTTACTGCAACATCTGTCAGCGCAGGAGAACTAGAGTTTAGTCTTGCTTCTGAACTTTGTGTCAACTTTGATTCAGAGTTTTACAGGGAATGACAAGCTAGTACGCGCACAATAGATTAAGAGGAAGCAAAGTTTTAAAATAGCCCAGCTTTTCGCATGAACGCGTTTTCAGTTCTCGTTCTGGAGTTTATTGTGTCCCGTGCACATTTACGCACCAAGAGCAATAGTAACTCTAGACTTCAGCCTGCCTCTGCCAGTGTCCCTCTGAGATGGAGTGATGAGAGATCTCCTTCGTTCTTCTCTTCAAGACACAGCAGAAGCCCTTCATCATCATCATCATCATCATCACATGCTGTAAATATGAAGCAGATCACTAAGCCCATCCGGATCCCATCAGAGAATCACTTTATAACAGCAGGGAAAGCACGATCAGCCAGTCGACAGCCGCCCTCATTGGACAAGCTGCCTGAGCAATACCTGATTGGACAGTGGCCGCGAGAGCCGTACCAACCCCAGCCGTCCTGCATGAGTGATAAAGCCACGCAGACGCCTGGATTTTGGACTGAGGAAGGAGGAGAGGTTAACGTACACAAGCGCTCGGCATCGTGGGGCAGCGCTGACCATCTCATAGAGATTGCTAAACTCCGGCAGCAGCTCCAGCGCAGTTTGCAGTGCAGTCGCAGTATCAAGGAGAAAGAAGAAGTGACGCCGCTGAATCAGATCCAGACAAAGCGACTCTCGGCATCTTCATCTAATATGGTCCATTCAAGACCCCTCATATGTAGAATGCCCAGCTATAGTGACTGTATTAACCAGGAGCTGGAGAGCGTCTTCATCTGTGAGGACTGGGGGAGGGAGGAGGAGAAGGCTTTGGAGGTGCGAGACGGTGGCCGTGCACCTGTGCCTCCTCTTCATCACGGTGACCTTCACACTCACAACGCTGAGATGCAGATCTGCTGCAGTCCTTGTTACTCCTGCTCTCCTACTCCGGACACTGAGAAAGATTACAGGAACGGTTCACCTCTGCCTCAGTTTTCCAGCTCTCCCAAACCCAACAACAGTTATACGTTTAAACGTGAGCCTCCTGAGGGCTGCGAGAAAGTCAAAGTGTTTGAAGATCTCATCACTTGTAGGACACAAGGCTTTCCCATCTTTTCCTGCCCCGACAGAAACAAGGTGAACTTCACTCCAAGTGGTTCTGCCTTCTGTCCTGTAAAGCTGCTGTGTTCGTCCCTATTCCCATCAGATGCTGCTGCTCGTCCCAGTCCGCTGGATAATCAAACTTCAGGACAGACGTCTGGTCCATTTACAGAGACCACTGTACAAAACAGCTTCCCGCTGCCCTCTGAATGCTGCAGTATTAGGAAGTGCCTGCTGCTCAGTTAGCCAATCAGAGCTCAGATCTGAAACAGCTGTCTGAATCAACTTTCTAGGAAGTTTCTTACTTGCTAATGGTTGTACAACAGGACCATTATGCTGTACATTGAACTTTGTCTTATGGTTTCATGTAATTCTGCTGGAATGCACAAATCTTTACTTAATCTTACAGCACATCCTACTAACCAGGTTAAACACATTAGATATGACAGTAACTGCTGCTGTAATCCAACAGCCAAAAATCTTATTTCATGCCTTAACACTTAACTCAGGTTTAGCTTCCATAGGGGCTGGATGATATAGCTATAACTAATTATATCTCAATATTATTTTGCATTCTTTTAATGAAACATATATATTTTTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU156994 lncRNA upstream 36102 699852 ~ 742852 (+) True G138200
TU157003 lncRNA upstream 60495 673651 ~ 718459 (+) False G138207
TU157034 lncRNA downstream 14268 809657 ~ 809941 (+) True G138229
TU157038 lncRNA downstream 19192 814581 ~ 814806 (+) True G138233
TU157039 lncRNA downstream 20605 815994 ~ 821269 (+) True G138234
TU157064 lncRNA downstream 63953 859342 ~ 883513 (+) False G138247
TU157066 lncRNA downstream 80980 876369 ~ 893121 (+) True G138247
CI01000027_00765527_00776450.mRNA mRNA upstream 2191 765467 ~ 776763 (+) True CI01000027_00765527_00776450
CI01000027_00738809_00739296.mRNA mRNA upstream 38560 738004 ~ 740394 (+) True CI01000027_00738809_00739296
CI01000027_00681087_00701456.mRNA mRNA upstream 77407 681087 ~ 701547 (+) False CI01000027_00681087_00701456
CI01000027_00637372_00642483.mRNA mRNA upstream 136312 637372 ~ 642642 (+) True CI01000027_00637372_00642483
CI01000027_00527282_00534071.mRNA mRNA upstream 243899 526867 ~ 535055 (+) True CI01000027_00527282_00534071
CI01000027_00909268_00918831.mRNA mRNA downstream 113124 908513 ~ 919213 (+) True CI01000027_00909268_00918831
CI01000027_00949578_00953698.mRNA mRNA downstream 153332 948721 ~ 954281 (+) True CI01000027_00949578_00953698
CI01000027_00980123_00987611.mRNA mRNA downstream 183766 979155 ~ 987884 (+) True CI01000027_00980123_00987611
CI01000027_01033975_01037549.mRNA mRNA downstream 237514 1032903 ~ 1037922 (+) True CI01000027_01033975_01037549
CI01000027_01045587_01050470.mRNA mRNA downstream 248003 1043392 ~ 1050863 (+) True CI01000027_01045587_01050470
TU156938 other upstream 350278 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156795 other upstream 678697 39146 ~ 100257 (+) True G138030
TU157051 other downstream 34385 829774 ~ 831683 (+) True G138238
TU157065 other downstream 59999 855388 ~ 869575 (+) False G138247
TU157117 other downstream 200581 995970 ~ 999181 (+) True G138290
TU157281 other downstream 711572 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 869019 1664408 ~ 1676860 (+) False G138515

Expression Profile