RNA id: CI01000027_00909268_00918831.mRNA



Basic Information


Item Value
RNA id CI01000027_00909268_00918831.mRNA
length 1653
RNA type mRNA
GC content 0.42
exon number 7
gene id CI01000027_00909268_00918831
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 908513 ~ 919213 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATGAAACACCCCGCGATATATTTTGTGTATTTGCCCACCTTTGTCGTGTCCTACCGCCAAAAAATACATGACTTGGTAATAAAACCAACATATTGTTTGCCTGTTTAAGATTGTTAATGTTATTAGAGCAGAATTGTTTGAGGTTAGCTTATAGTTTTAACCTATAGGCCTAACTCTAGCTATTCTTCCGTCTTAACGCGCCGCTCGACCGTATAGAAGCCAGTCAGACTCGACTGAACGAAAGGTGTTCATCTATAATATATTTACATAGGACAAAAATGGGTAAAAACCAGCGTATTTTGTGCGAACCGGCACTTATATTAACGACACTTGAATCTCGACTGTGAAACAGACTTACAAAATCAGACTTTTCAACTAGTCTGACCGTGTTCATGCGGTACGCGAGAGCCGCGTCGCGCCTACATTTCACGGGCGCAGGGGTTGTACTTTTAACACGTCTCATAATCTGTTTGAAATTGATTTTTTTTATTTGTATTTTTACTAAGTGATAGATACAACGTCATTTTAGTGTTGATGAGATCTAGCCTCGAACGCACGCTGATCTGTCCTTTCAGACTATGAGTTGGATGAGGATGAAGAGAAAATGATCAAACCGGATCAACTTCAAGCGACACGGTGGTGTAAACTATAGAAGCAGTGCCACGAATGCTATCAGCAGCCTTTGACTACAGAAATGTAAGTATAATATTAAGGTTTTTTTTACTTAATATGTACCTTAGTAACAATGTGAATATGTCACTGCCTGCTGTTGTTGTCATTCCCCATTTCACAGAGATCTTCAGACCAGACTCGACAAAGAAACATGTCAGTAATCCTCCTAGGTTACAATATACCCTTTCCATAAGGATCTGGAAGATGGCTATTCCCTCAGACATAAACTCAGTGGAGCTTGCACCTCTGGTTCTTGAAGATGAGGTTTATAAAGAGGATTTCGAGACTGGTGGTCTGCTAACGGGAAGAGAGGAGATGCCAGCTGCCATGATAAAAGCTTCAGCCTTAAACGGAAATTACAAAAGGAGAAAGGATGAAGCAAGTATATCATGTCCATGTGGGAAAGTCAGCAAAGAGGAGATCAGTTCCTTCAGGCTCTGCCAAAGCTCTCTGAGGAAAATTCATTTATTCAGCATGGCTACGAATCCATACTCAGCAGGCAGAGATGAGAAGTCACAGCAGGACCACACACCCCTCCGTACAGCTGTAAATATTAATACGGAGCCCGTGCGCAGCGCTTTGTTGATGCCGATCTGACATGCCACCTTCATGAGGAACCTCCCTTGAGGCGGCTGGGAAGCGAAAAGAGGTTTTACTGCCACAGAAGAGCCAGACTCGAGCAATGTGCCCTTTAGATAAAAGACATTAAGTCTGGGGTCTGGACCATGAGTGGCTTTGGGTTGTAAACTGTGAGATGTTGTTCTGGGGGGAGAATGTTGCATCTACTGTATATAAAGAAAAACCTGCAGCTATGTAAGGACAAGATGGCAGAAACTTTACCGGGCGCTGAACATGATGACTGTGAGCATGAAGCATTCAGAAAGACTAAATTCTAACTTCAAAAATGTTGGATTTACTTAAATATGAAATTGAAAAAAAATGGTTCCAGCTATATTAAGTACTCATTCACATACTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157066 lncRNA upstream 15392 876369 ~ 893121 (+) True G138247
TU157064 lncRNA upstream 25000 859342 ~ 883513 (+) False G138247
TU157039 lncRNA upstream 87244 815994 ~ 821269 (+) True G138234
TU157038 lncRNA upstream 93707 814581 ~ 814806 (+) True G138233
TU157034 lncRNA upstream 98572 809657 ~ 809941 (+) True G138229
TU157091 lncRNA downstream 14530 933743 ~ 934498 (+) True G138267
TU157101 lncRNA downstream 49728 968941 ~ 969167 (+) True G138277
TU157127 lncRNA downstream 65244 984457 ~ 984699 (+) True G138300
TU157136 lncRNA downstream 84780 1003993 ~ 1004346 (+) True G138309
TU157138 lncRNA downstream 93664 1012877 ~ 1013154 (+) True G138311
CI01000027_00779517_00795032.mRNA mRNA upstream 113124 778954 ~ 795389 (+) True CI01000027_00779517_00795032
CI01000027_00765527_00776450.mRNA mRNA upstream 131750 765467 ~ 776763 (+) True CI01000027_00765527_00776450
CI01000027_00738809_00739296.mRNA mRNA upstream 168119 738004 ~ 740394 (+) True CI01000027_00738809_00739296
CI01000027_00681087_00701456.mRNA mRNA upstream 206966 681087 ~ 701547 (+) False CI01000027_00681087_00701456
CI01000027_00637372_00642483.mRNA mRNA upstream 265871 637372 ~ 642642 (+) True CI01000027_00637372_00642483
CI01000027_00949578_00953698.mRNA mRNA downstream 29508 948721 ~ 954281 (+) True CI01000027_00949578_00953698
CI01000027_00980123_00987611.mRNA mRNA downstream 59942 979155 ~ 987884 (+) True CI01000027_00980123_00987611
CI01000027_01033975_01037549.mRNA mRNA downstream 113690 1032903 ~ 1037922 (+) True CI01000027_01033975_01037549
CI01000027_01045587_01050470.mRNA mRNA downstream 124179 1043392 ~ 1050863 (+) True CI01000027_01045587_01050470
CI01000027_01089832_01104918.mRNA mRNA downstream 170619 1089832 ~ 1104980 (+) True CI01000027_01089832_01104918
TU157065 other upstream 38938 855388 ~ 869575 (+) False G138247
TU157051 other upstream 76830 829774 ~ 831683 (+) True G138238
TU156938 other upstream 479837 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156795 other upstream 808256 39146 ~ 100257 (+) True G138030
TU157117 other downstream 76757 995970 ~ 999181 (+) True G138290
TU157281 other downstream 587748 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 745195 1664408 ~ 1676860 (+) False G138515
TU157841 other downstream 2565174 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 2582859 3502072 ~ 3520065 (+) True G138953

Expression Profile