RNA id: CI01000027_01134221_01143363.mRNA



Basic Information


Item Value
RNA id CI01000027_01134221_01143363.mRNA
length 3352
RNA type mRNA
GC content 0.39
exon number 9
gene id CI01000027_01134221_01143363
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1132157 ~ 1143526 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAATAAATAGGCGCCCATCTCCCTACACAGGTTGACAGAGCCAGACTCACACAGAATCTCAACAGTAATGTTATTGTACCTAGTGATGGCCGATTTCGAAACACTGCTTCAAGAAGCTCCGAAGCTTTATGAATCTTTTGTTTCGAATCAGTGATTCAGAGCATGTATCAAACTGCCAAAGTCACGCAATTTCAGTAAACGAGGCTTCGTTACGTCATAACTGTTTCGAAACAGTTTGACATTTCAATGTTTCACCGGTAGAGGGCGATTATCTCTGTGAACCCATGAATCATGCGGATTCACTGAGAACCATTGAACAAGTGTCTATGTGCTTTACCCTATGGTCAAAGAATATACACTAACAAGAAGCGACACTTAATAGAACGTTCCATTGCAACACCGGCGCCCAGCAGCAGCCCTGCGTTTCCGCCATTTTGGGGTGAAAGCGAGTCGGCAGTCCACTAGTTTCTACGGCAATATCAGCTGCTTTGTTAAAAAAAAAAAAACATACATTAAAGCTGAAATCCAACTTGAATGATGACAACACAGAATAAAATACTATCACTAGTGATCATCATATCCTTTTTACAGTTTATTTTACACACTTTGTGTTTAAGTCTTCCACTTTTTTCACAAAACCTTCGCTCTCTCAAAACCCAGTCAGTTTGGGTTGAAATTCTTTAAAAGGCTTATAAACACTGAATTATTACCAACATATGAAATTAAATGAAGGACATGCATCAGAAAAATTGGGAATGTTGGACAATAAATATATGAATATAACAGCTTGATTTTGCAGTGTTGTCTAATGTCCGTTAAAGCAAAAGTGTCCAAAAGTGGGAATTATGCTATAACGGACACAGCAATGCATTATGTATTATAAGATCATTATGTTTGTATCGTGATCCATTAAAAAGTACAATATAGCCTATTTCAATTCAGACCTAGATATTATTGCTATTACTCCACTAGGTCTAAAATATATTGTTTGCGGCAAACATGATGATCTTAAATTTATTAATTATTAATTTACTATTAATAAATGTGTAAAGTTGCATAAAATGGAAATACTCAATAAAGTGGGCTAACTATGTTACCTCAGATGGTTGAATGGTTGGATTCCACAACTGGTAAAATAAAACACATATAAGACAATACGACATTTACTGTGGGAGCCATACAATTTACTGGTGACTTAATTTAAAAAACTGTTCTATTGCGCTTCTGATTTGGCAGTGAAATTCGCCGATTTTGGGTGCGTAAGATGTGAAGGATTCTATGGTCCAGTTAGTATTTTCACCCCATAATGGCGACCGCGCTACCGGAGCGCCATCTAGTGGCTGTTACCCAAAAAATATCAAAGTGTCGCCTCTTGGGTTCTAAGCTCTTTACTATGGTTTTACCTGATCTCTGTCTGATTAGTGTTACACATTTGTAGACGTTTTAATTAGACATTAGTATAATTAAAATGAATATTGGTGGTTATTAATCTCTTATTGGCCTGTTTAGCTTGAACAATGGAACAAACAAAACAAGCCCTGAAAATTGCTAAAAGAACACATATTATACAGACACTCTATATTTAATTTTATTAGATGATTAGTTAATTGCATTTGATAGATTTTACTTTTAATAAAACATTTGCAATAGATTTGTAAAAGGTGTTTTTATGCATGTTTAGCGTGAGTTTTGTGGCATTTACACTGTTCTGACCACTAGGGGTCACCGTGGAGACGGGTGTCAGATTGTTTCGAAGCCTCGACACATTACGGCACATTTGCTTCAACCGTTTCAGTGTTTCACGAAGCCTCGCTCTGCCCATCACTAATTGTACCCACACTTTAGGTTTACATTTCACAAGTTGCTCAATAGCAAATAAAACAACAACGTCTCTGGGATAGAGGATAAGGGATCTCTCTCGATCTGTGTCTCTCTGCTGCTTTATCTCTGTGGCACGCTGTGTAGCAGGTAAGCCACGCTGCCGCTAATTGGAATCAGCTGCAGATGATTTGAAGCGCTGCTTGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAACATGGGAACATCCAAAACATACACAATTACGTCATGGGACGTAACAAAAGCAACAGGATTGCACAAAAAATTTCATTGTGCACCAGTGATATGTCAGAATTTCTGCCTGCTTTCTCAACTGAATTTCATTCAAACACTGCACAAGAGTACTCATCCACAAGTGTTTAATGATGAGGACACTCTCAATCTCCCTGCAAATTATGCAGTTGGCTGGATGGAAACTCTGGATGATGAAAAGTTAATTTCTACCATGCAGATAATTGAGAATGTTTACAAATTATATAATCAATATTTCAGACTCGTGCCATCTCTAATCTGGACTGAGACTCGCATAGACGTGCCACTGCTATACAAGTTAAACAAACAGGAGGTTCAGCCATTGTTAGCTGTGGGAAGATTTGTCTGCAGCATGTCTCTGACAGTGTCTCAGGGTGAGGGAATAACGGTCATCACCGTCGCCCCAAACCCAAAGAGCAAATGGCCCGTACTGTGTCAGATTCTGAGATTTCTGTGCTGCAGTCCAGTGTGTTTCGTATCTCAGAATATGAAAGGAAAGCTGACGAACACCCACACAGCTCTTGGGATTATCCAGATGATCGTTGGTATCCTCAATATTGTGGTGGGGATTGTGTTTACATGCCTTGGGTTATACTGGAACATATATAGGATGGCCATGGGACCCTTTTGGCTCGGTAGTATGTTCCTTGTAGCTGGAATTGTGTGTATTCTTGCAGCTAAGTTTCCCAGTTCTTGTCTGCTGGTCATCGGAATAATTCTGAATGTAGTCAGTGCTGCACTGGCTCTCACAGCTGTTGCGCTGTATTCAGTGGACCTTGCGAATACTCATACTGGATATTACTACGATGATTCTTGTGATGAAAGCTACAATTCTTATTCAGGCTATTCACGCTATGATTATGATAGATATAGAACCCCTTCCCCTGAAGAGAACATGAGAAAGGAGACCTGTCTGTACTACAAGAATCTCACTGAGCTCTGTGTGACGATCAGTTTCTGTGTTTTGACTGGGAAAGCTTTGTGCAAGAAGGATGAAGATGCAAAGGCGGTGGAGGATCCAGAAATTCACAAGCTGCTCCTGGAAGACACCACTGCCGGAGCTGCATGACAAGATTAACAGACAAAATAACCAGTCATATTGTTATCAGTCTTCTTGTTTCCTTTTACAAAAGTGGTGTTACCATTGATCTCTCTATATATAGATTAGTGGGTGTTACCTTTTGTTACCTTTTTCAGTTTTGTTACGATCTTTGGGGCAGCTTTTTTAAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157116 lncRNA upstream 107217 1021521 ~ 1024940 (+) True G138289
TU157139 lncRNA upstream 116912 1015044 ~ 1015245 (+) True G138312
TU157138 lncRNA upstream 119003 1012877 ~ 1013154 (+) True G138311
TU157136 lncRNA upstream 127811 1003993 ~ 1004346 (+) True G138309
TU157127 lncRNA upstream 147458 984457 ~ 984699 (+) True G138300
TU157102 lncRNA downstream 36384 1179910 ~ 1181519 (+) True G138278
TU157177 lncRNA downstream 70922 1214448 ~ 1214747 (+) True G138350
TU157182 lncRNA downstream 75127 1218653 ~ 1218878 (+) True G138355
TU157186 lncRNA downstream 77346 1220872 ~ 1225465 (+) True G138357
TU157125 lncRNA downstream 92333 1235859 ~ 1236549 (+) True G138298
CI01000027_01119958_01123077.mRNA mRNA upstream 9058 1119430 ~ 1123099 (+) True CI01000027_01119958_01123077
CI01000027_01089832_01104918.mRNA mRNA upstream 27177 1089832 ~ 1104980 (+) True CI01000027_01089832_01104918
CI01000027_01045587_01050470.mRNA mRNA upstream 81294 1043392 ~ 1050863 (+) True CI01000027_01045587_01050470
CI01000027_01033975_01037549.mRNA mRNA upstream 94235 1032903 ~ 1037922 (+) True CI01000027_01033975_01037549
CI01000027_00980123_00987611.mRNA mRNA upstream 144273 979155 ~ 987884 (+) True CI01000027_00980123_00987611
CI01000027_01148208_01150893.mRNA mRNA downstream 4532 1148058 ~ 1150917 (+) True CI01000027_01148208_01150893
CI01000027_01153787_01158632.mRNA mRNA downstream 10261 1153787 ~ 1159001 (+) True CI01000027_01153787_01158632
CI01000027_01162273_01168513.mRNA mRNA downstream 18747 1162273 ~ 1168657 (+) True CI01000027_01162273_01168513
CI01000027_01176638_01185141.mRNA mRNA downstream 32310 1175836 ~ 1185307 (+) False CI01000027_01176638_01185141
CI01000027_01413155_01416305.mRNA mRNA downstream 269575 1413101 ~ 1417658 (+) True CI01000027_01413155_01416305
TU157117 other upstream 132976 995970 ~ 999181 (+) True G138290
TU157065 other upstream 262582 855388 ~ 869575 (+) False G138247
TU157051 other upstream 300474 829774 ~ 831683 (+) True G138238
TU156938 other upstream 703481 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156828 other upstream 1035430 93559 ~ 96727 (+) True G138057
TU157281 other downstream 363435 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 520882 1664408 ~ 1676860 (+) False G138515
TU157841 other downstream 2340861 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 2358546 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 3593872 4737398 ~ 4774262 (+) False G140436

Expression Profile