RNA id: CI01000027_01176638_01185141.mRNA



Basic Information


Item Value
RNA id CI01000027_01176638_01185141.mRNA
length 2114
RNA type mRNA
GC content 0.36
exon number 6
gene id CI01000027_01176638_01185141
representative False

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1175836 ~ 1185307 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATTAAAACATAAAGCCAACATCATGGCAAAGCAACCATAGCAATTAACAATATGAAAAATGAAAATACAATCAGTTTTCTTTAAGTTTACACTGAGTGTTTTGAGTACTTCATTATTGAAAATGCTCCGCTATTGTTTCACAACCAGAAAGTGTCTAAATACTTTTTGCCTTCACTTTAAACAGTATATCTATTGTTTTATAATTGAAAACATTCTATAAATTAAGACCTGGTTTGCATTTGCGCTTTAAAATAAAGGATACTTTGTTGGATATTTTTGGTTAAATAATGCAAAGACATTCGTACATTTTAAGGGTGGCTTAAATGTATTTAAATGTAGCTCCAAATGTATTTAGGACCGGTTTTTTTTTTATGCAGCATGCAAATATACATCAAGCCAATAGATAATCACATGATATCAATGAGTTCTTATAGCTCCCAGACAGAACTCTACCTGTACCAGAACTAAACGCTGTTGTGATCGACACTTGTTTCTGGATGTCCATCAAGAATTGTGAGGTATTGTTTTATTATTTTATCTTTTTTTTTTTAACAATTATTTAAAAAGATCAGCTATATTTAATGTAGACTTAAATTTAAAGCCATGAAAAGTATAGATAGGCGTATTTTGCAATTTTCATTTTATCTGTTAAAATGTAACATTTGTAAAAAAAAAAACAAAAAACATTTGATCATAATTCAGCTATAACTCCTGTATAAATACATTCATGTCACCTCTGCACCGCATTAAACCTCTTTGTAACGTTGTGTACTAATGTATTGTTTTATTCTCCTCAGACAATGAAGAAAATGGGAGTTCCTGGCAAAATTATCTTTGTCTTGATACTGCTACTGCACAAGAGTATTCAACAAGAGACATTTAATGATCGGGCGACACTCAATGTCCCTGAAAATGAAATTGGTTGGATGAAAAATCTGGATGAAGAAAAGTTAATTTCTGACATCACTATTCCTGGTACCCATGACTCCTTGGCCCTTCATGGAGGACCGGCAGCAGAATGTCAGGCATGGTCACTACAGGACCAGTTAAATGCCGGGATACGATACTTCGACTTGAGGGTGTCTGGCTTTGGATTAAGAATTATGCATGGACCGGTTTCCCAACATACAACCTTTCCTGATGTTTTCAACACAATTAAGACATTTTTATCTAAATATAAAACTGAGACAGTGTTGGTCAGAGTTAAGCCTGTTTTTTTTCTTCTTAAGAACAAAGTTCCAGGTTTAGTTGAAAATGTGATTGAAAATGACATTAGCTGGGTTGCAGATGAAATACCAAAAATTGGTCAAGTAAGAGGAAAGATTGTATTTGTTCAGAAAAACAGCTTTGAGCTGGGTATCCCTCTATTTGAAACCGATGAACATAATGACTATATAGTAACTGATGTTGAAACAAAGATACAAAAGATTATTATGCATCTGACTGAGGCTACAGACGAACATAATAGAGCTGATAAAGTTGTTCTAAACTATTCAAGTGGCACAGGCTGGCCTAAAGTCAGGCTATTAAATACCCCCAAAAGTGTGGCAAGAAGTTTGGTCTCTATCTCCTGTGGGAAGTCCATCACCTCCGTCTTCAGCATGTCTCTGACAGTGTCTCAGGGTGAGGGTTTGACAGTCATCACTGTCTCCTCAAACCCAAAGAGCAAATGGCCCGTACTGTGTCAGATTCTGGCTTCTCTGTGCTGCAGTCCGGTCATTGTAGCTGGAATCGTGACTATTCTTGGAGCTAAGTTTCCCAGTCCTTGTCTGATGATCGTCAGAGGACTAGATATCATGATGATAGTGTTGTCGGTCCTTCAGCTCTGTGTGACGATCAGTTTCTGTGTTTTGACTGGGAAAGCTTTGTGCAAGAAGGATGAAGATGCAAAGGATCCAGAACTTTACAAGCCGCTCCTGGAAGACGTCACTGCCGTTCCTGCATGATAGAGAGAGAACATACAAAGCAACAAATATAAACAGTATATACACCGCCTCTCAGTATAGTACTGAGATGATTTAAAGCAGATTATACCTTGATACATGTTTATTCTTCTAAAGTGTTTTCCTTAAACATTTGGTTACTTCTAGAAAATAAGGGGTACTTTTTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157116 lncRNA upstream 150896 1021521 ~ 1024940 (+) True G138289
TU157139 lncRNA upstream 160591 1015044 ~ 1015245 (+) True G138312
TU157138 lncRNA upstream 162682 1012877 ~ 1013154 (+) True G138311
TU157136 lncRNA upstream 171490 1003993 ~ 1004346 (+) True G138309
TU157127 lncRNA upstream 191137 984457 ~ 984699 (+) True G138300
TU157177 lncRNA downstream 29141 1214448 ~ 1214747 (+) True G138350
TU157182 lncRNA downstream 33346 1218653 ~ 1218878 (+) True G138355
TU157186 lncRNA downstream 35565 1220872 ~ 1225465 (+) True G138357
TU157125 lncRNA downstream 50552 1235859 ~ 1236549 (+) True G138298
TU157189 lncRNA downstream 52442 1237749 ~ 1238319 (+) True G138360
CI01000027_01162273_01168513.mRNA mRNA upstream 7179 1162273 ~ 1168657 (+) True CI01000027_01162273_01168513
CI01000027_01153787_01158632.mRNA mRNA upstream 16835 1153787 ~ 1159001 (+) True CI01000027_01153787_01158632
CI01000027_01148208_01150893.mRNA mRNA upstream 24919 1148058 ~ 1150917 (+) True CI01000027_01148208_01150893
CI01000027_01134221_01143363.mRNA mRNA upstream 32310 1132157 ~ 1143526 (+) True CI01000027_01134221_01143363
CI01000027_01119958_01123077.mRNA mRNA upstream 52737 1119430 ~ 1123099 (+) True CI01000027_01119958_01123077
CI01000027_01413155_01416305.mRNA mRNA downstream 227794 1413101 ~ 1417658 (+) True CI01000027_01413155_01416305
CI01000027_01519267_01519711.mRNA mRNA downstream 333960 1519267 ~ 1519776 (+) True CI01000027_01519267_01519711
CI01000027_01543335_01543974.mRNA mRNA downstream 358028 1543335 ~ 1544229 (+) True CI01000027_01543335_01543974
CI01000027_01546280_01571152.mRNA mRNA downstream 360436 1545743 ~ 1571220 (+) True CI01000027_01546280_01571152
CI01000027_01572250_01574108.mRNA mRNA downstream 386586 1571893 ~ 1574410 (+) True CI01000027_01572250_01574108
TU157117 other upstream 176655 995970 ~ 999181 (+) True G138290
TU157065 other upstream 306261 855388 ~ 869575 (+) False G138247
TU157051 other upstream 344153 829774 ~ 831683 (+) True G138238
TU156938 other upstream 747160 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156828 other upstream 1079109 93559 ~ 96727 (+) True G138057
TU157281 other downstream 321654 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 479101 1664408 ~ 1676860 (+) False G138515
TU157841 other downstream 2299080 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 2316765 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 3552091 4737398 ~ 4774262 (+) False G140436

Expression Profile