RNA id: TU157102



Basic Information


Item Value
RNA id TU157102
length 319
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G138278
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1179910 ~ 1181519 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAGACGCAAGCCCAGTTTTGTGAACTGGTTCAGAAGATTCATTTATAATATCCGACTCACCGATTCACCGACATTGCTGTTTTAGACCAGCTTTGCAGAGTTCATTTATGCTGTCGAACTTCTAGTTAAATTTCCCCAAAATTTCGACATTTCCCTAAAATCTAGTTCCTGCACTTTGGACTGTTAGTCACAGGGAAGTTTGGTCTCTATCTCCTGTGGGAAGTCCATCACCTCCGTCTTCAGCATGTCTCTGACAGTGTCTCAGGGTGAGGGTTTGACAGTCATCACTGTCTCCTCAAACCCAAAGAGCAAATGGCCCGTACTGTGTCAGATTCTGGCTTCTCTGTGCTGCAGTCCGGTGTGTTTCGTATCTCAGAATTTAAAAGGAAAGCTGACGAACATCCACACAGCTTTTGGGACTATGCAGATAATAGTTGGAGTCATCAATATTGTGTTTGGGATTTTACTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157116 lncRNA upstream 154970 1021521 ~ 1024940 (+) True G138289
TU157139 lncRNA upstream 164665 1015044 ~ 1015245 (+) True G138312
TU157138 lncRNA upstream 166756 1012877 ~ 1013154 (+) True G138311
TU157136 lncRNA upstream 175564 1003993 ~ 1004346 (+) True G138309
TU157127 lncRNA upstream 195211 984457 ~ 984699 (+) True G138300
TU157177 lncRNA downstream 32929 1214448 ~ 1214747 (+) True G138350
TU157182 lncRNA downstream 37134 1218653 ~ 1218878 (+) True G138355
TU157186 lncRNA downstream 39353 1220872 ~ 1225465 (+) True G138357
TU157125 lncRNA downstream 54340 1235859 ~ 1236549 (+) True G138298
TU157189 lncRNA downstream 56230 1237749 ~ 1238319 (+) True G138360
CI01000027_01162273_01168513.mRNA mRNA upstream 11253 1162273 ~ 1168657 (+) True CI01000027_01162273_01168513
CI01000027_01153787_01158632.mRNA mRNA upstream 20909 1153787 ~ 1159001 (+) True CI01000027_01153787_01158632
CI01000027_01148208_01150893.mRNA mRNA upstream 28993 1148058 ~ 1150917 (+) True CI01000027_01148208_01150893
CI01000027_01134221_01143363.mRNA mRNA upstream 36384 1132157 ~ 1143526 (+) True CI01000027_01134221_01143363
CI01000027_01119958_01123077.mRNA mRNA upstream 56811 1119430 ~ 1123099 (+) True CI01000027_01119958_01123077
CI01000027_01413155_01416305.mRNA mRNA downstream 231582 1413101 ~ 1417658 (+) True CI01000027_01413155_01416305
CI01000027_01519267_01519711.mRNA mRNA downstream 337748 1519267 ~ 1519776 (+) True CI01000027_01519267_01519711
CI01000027_01543335_01543974.mRNA mRNA downstream 361816 1543335 ~ 1544229 (+) True CI01000027_01543335_01543974
CI01000027_01546280_01571152.mRNA mRNA downstream 364224 1545743 ~ 1571220 (+) True CI01000027_01546280_01571152
CI01000027_01572250_01574108.mRNA mRNA downstream 390374 1571893 ~ 1574410 (+) True CI01000027_01572250_01574108
TU157117 other upstream 180729 995970 ~ 999181 (+) True G138290
TU157065 other upstream 310335 855388 ~ 869575 (+) False G138247
TU157051 other upstream 348227 829774 ~ 831683 (+) True G138238
TU156938 other upstream 751234 418294 ~ 428676 (+) True CI01000027_00391159_00499309
TU156828 other upstream 1083183 93559 ~ 96727 (+) True G138057
TU157281 other downstream 325442 1506961 ~ 1507816 (+) True G138436
TU157376 other downstream 482889 1664408 ~ 1676860 (+) False G138515
TU157841 other downstream 2302868 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 2320553 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 3555879 4737398 ~ 4774262 (+) False G140436

Expression Profile