Item | Value |
---|---|
RNA id | TU157102 |
length | 319 |
lncRNA type | sense_over |
GC content | 0.38 |
exon number | 2 |
gene id | G138278 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000027 |
NCBI id | null |
chromosome length | 10680226 |
location | 1179910 ~ 1181519 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU157116 | lncRNA | upstream | 154970 | 1021521 ~ 1024940 (+) | True | G138289 |
TU157139 | lncRNA | upstream | 164665 | 1015044 ~ 1015245 (+) | True | G138312 |
TU157138 | lncRNA | upstream | 166756 | 1012877 ~ 1013154 (+) | True | G138311 |
TU157136 | lncRNA | upstream | 175564 | 1003993 ~ 1004346 (+) | True | G138309 |
TU157127 | lncRNA | upstream | 195211 | 984457 ~ 984699 (+) | True | G138300 |
TU157177 | lncRNA | downstream | 32929 | 1214448 ~ 1214747 (+) | True | G138350 |
TU157182 | lncRNA | downstream | 37134 | 1218653 ~ 1218878 (+) | True | G138355 |
TU157186 | lncRNA | downstream | 39353 | 1220872 ~ 1225465 (+) | True | G138357 |
TU157125 | lncRNA | downstream | 54340 | 1235859 ~ 1236549 (+) | True | G138298 |
TU157189 | lncRNA | downstream | 56230 | 1237749 ~ 1238319 (+) | True | G138360 |
CI01000027_01162273_01168513.mRNA | mRNA | upstream | 11253 | 1162273 ~ 1168657 (+) | True | CI01000027_01162273_01168513 |
CI01000027_01153787_01158632.mRNA | mRNA | upstream | 20909 | 1153787 ~ 1159001 (+) | True | CI01000027_01153787_01158632 |
CI01000027_01148208_01150893.mRNA | mRNA | upstream | 28993 | 1148058 ~ 1150917 (+) | True | CI01000027_01148208_01150893 |
CI01000027_01134221_01143363.mRNA | mRNA | upstream | 36384 | 1132157 ~ 1143526 (+) | True | CI01000027_01134221_01143363 |
CI01000027_01119958_01123077.mRNA | mRNA | upstream | 56811 | 1119430 ~ 1123099 (+) | True | CI01000027_01119958_01123077 |
CI01000027_01413155_01416305.mRNA | mRNA | downstream | 231582 | 1413101 ~ 1417658 (+) | True | CI01000027_01413155_01416305 |
CI01000027_01519267_01519711.mRNA | mRNA | downstream | 337748 | 1519267 ~ 1519776 (+) | True | CI01000027_01519267_01519711 |
CI01000027_01543335_01543974.mRNA | mRNA | downstream | 361816 | 1543335 ~ 1544229 (+) | True | CI01000027_01543335_01543974 |
CI01000027_01546280_01571152.mRNA | mRNA | downstream | 364224 | 1545743 ~ 1571220 (+) | True | CI01000027_01546280_01571152 |
CI01000027_01572250_01574108.mRNA | mRNA | downstream | 390374 | 1571893 ~ 1574410 (+) | True | CI01000027_01572250_01574108 |
TU157117 | other | upstream | 180729 | 995970 ~ 999181 (+) | True | G138290 |
TU157065 | other | upstream | 310335 | 855388 ~ 869575 (+) | False | G138247 |
TU157051 | other | upstream | 348227 | 829774 ~ 831683 (+) | True | G138238 |
TU156938 | other | upstream | 751234 | 418294 ~ 428676 (+) | True | CI01000027_00391159_00499309 |
TU156828 | other | upstream | 1083183 | 93559 ~ 96727 (+) | True | G138057 |
TU157281 | other | downstream | 325442 | 1506961 ~ 1507816 (+) | True | G138436 |
TU157376 | other | downstream | 482889 | 1664408 ~ 1676860 (+) | False | G138515 |
TU157841 | other | downstream | 2302868 | 3484387 ~ 3486647 (+) | True | G138915 |
TU157886 | other | downstream | 2320553 | 3502072 ~ 3520065 (+) | True | G138953 |
TU159628 | other | downstream | 3555879 | 4737398 ~ 4774262 (+) | False | G140436 |