RNA id: CI01000027_01926296_01931553.mRNA



Basic Information


Item Value
RNA id CI01000027_01926296_01931553.mRNA
length 1164
RNA type mRNA
GC content 0.44
exon number 4
gene id CI01000027_01926296_01931553
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1925958 ~ 1931686 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATAAATAGCACACACTGTAAACAAACAACAACAACAAAAGAATATTTGTGTTGCTTGCCGATTCTTTGCAATTATTTGTGAAATTTACTAACAATTTCTGAGTGAAAATTGTTTCTACACCATTTTTTTAGAGGATTGTAAACCACTGAGAAAGTGTAGGCTATGCTAATGCCATGGGCGTGTTGCTTGCAGTTACTGTGGACCAAAAAAGTAGGTCATTTGAGTTCCTCCTTACCACAACTTTTCACCATAAAAAGCCAAGGTACAGAGAAAAGACTCATTTCATCAGAAGAACATAGAGCTATATCTGAAGAAGAAAGGTGGAAGTGATCAGTCATGGCCCAGGCTCCGGTCTATTCTCAGGGCGGTTATGAAAATCCTCATGCAGTCCATCCTGACAACATCCAGCTCCATGCCCAGATCCTGAATCACCACAATGAGCCAGTGGTTGATGTTCAACCCCCTGTGTACCAGCGTCCTCGCGCTCCACCGGCTGACCCTGTGCCGGATTACATGGGTTACTCCATATTTACCACGGTGTTCTGCTGCATGTTTCTAGGACTGATCGCTGCTTACAACTCTGGAGCTACCCGCAAAGCTAACCGTGATGGACGGAGGGCAGAAGCAGCAAGCAGCTCCCAAACTGCACTCATCCTGAACCATGGTGATAATGCTGAAAATCCTCATGCAGTCCATCCTGACAGTGTCCAGCTGCAGGTTTTGAATCACCACGAAGAGCCTGTAGTCGTTGTTCAACCCCCTGCGTACCAGCGTACTCGCGCTCCACTGCCTGACCCTGTGCCGGATTACATGTGTTACTCACGATTTACCATACTGTTATGCTTCTGTATTGGAAGTGCTGCTCTTTATTACTCTAGAGCTACGCGCAAAGCTAATGGTGCTGGAGAGAGGGCAGAAGCAGCGGAAAACTCTCAAATTGCACTCATCCTGAACCATGTTGGTGTTGTTGTGGGCCTCATCTGTACTGGACTATATATATACATCAAAATATACCTTGAAAATAATTAACTAAAAGTTATCGTTCCAAAGCTATGCCCCCTTTTTTTTTTTTTTTTTTTTTTTGCAAATTTGGTATTGTACTCTCACATGCAATGTTTTCATAATGTTGGCTGAATATTTGTGAGTTTTTGATGATGGTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157490 lncRNA upstream 14407 1911283 ~ 1911551 (+) True G138612
TU157488 lncRNA upstream 16490 1909242 ~ 1909468 (+) True G138610
TU157416 lncRNA upstream 22433 1890773 ~ 1903525 (+) False G138549
TU157417 lncRNA upstream 22433 1890773 ~ 1903525 (+) True G138549
TU157422 lncRNA upstream 36275 1886234 ~ 1889683 (+) True G138554
TU157420 lncRNA downstream 6239 1937925 ~ 1949609 (+) True CI01000027_01937897_01954661
TU157504 lncRNA downstream 29866 1961552 ~ 1961856 (+) True G138625
TU157506 lncRNA downstream 33646 1965332 ~ 1965606 (+) True G138627
TU157572 lncRNA downstream 120894 2052580 ~ 2052935 (+) True G138686
TU157558 lncRNA downstream 145394 2077080 ~ 2082052 (+) True G138672
CI01000027_01878501_01881301.mRNA mRNA upstream 43711 1878501 ~ 1882247 (+) True CI01000027_01878501_01881301
CI01000027_01865502_01875022.mRNA mRNA upstream 49019 1865502 ~ 1876939 (+) False CI01000027_01865502_01875022
CI01000027_01850735_01853042.mRNA mRNA upstream 72445 1850735 ~ 1853513 (+) True CI01000027_01850735_01853042
CI01000027_01843365_01850501.mRNA mRNA upstream 75457 1843365 ~ 1850501 (+) True CI01000027_01843365_01850501
CI01000027_01811625_01827803.mRNA mRNA upstream 97776 1809757 ~ 1828182 (+) False CI01000027_01811625_01827803
CI01000027_01937897_01954661.mRNA mRNA downstream 6068 1937754 ~ 1954787 (+) False CI01000027_01937897_01954661
CI01000027_01976509_01978931.mRNA mRNA downstream 44762 1976448 ~ 1980721 (+) True CI01000027_01976509_01978931
CI01000027_01982332_01985064.mRNA mRNA downstream 50348 1982034 ~ 1985157 (+) True CI01000027_01982332_01985064
CI01000027_01998746_02018404.mRNA mRNA downstream 66986 1998672 ~ 2018789 (+) True CI01000027_01998746_02018404
CI01000027_02034579_02038173.mRNA mRNA downstream 102674 2034360 ~ 2039054 (+) True CI01000027_02034579_02038173
TU157376 other upstream 249098 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 418142 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 926777 995970 ~ 999181 (+) True G138290
TU157065 other upstream 1056383 855388 ~ 869575 (+) False G138247
TU157051 other upstream 1094275 829774 ~ 831683 (+) True G138238
TU157841 other downstream 1552701 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 1570386 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 2805712 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 2805712 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 2805712 4737398 ~ 4774262 (+) True G140436

Expression Profile