RNA id: CI01000027_03421902_03436988.mRNA



Basic Information


Item Value
RNA id CI01000027_03421902_03436988.mRNA
length 995
RNA type mRNA
GC content 0.48
exon number 4
gene id CI01000027_03421902_03436988
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3421828 ~ 3437216 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACATAAATGACAAAGTAATGAAGTAAATTATTCAAGTACTTTATATCCCTGCTGGAGTGACATATCTGGAAAACATGAACTGTGGGAGGGAGGAAGGGGCGACGGACAAGTTCAGCAGAAAGAAAAGAAAGCAAGTCAAAGGAGCAGAGAAATGCAGCCGCTCTAATCTCAAGTCTGGCTCCACAAACAGTTTGGGTGAGAAGCTCCAGAGGTCGAGGACCCCTGCAACAGTGCAAAATATACCTCAGGCCAGATATAGCGCTACTGTTCTGGAAGAAAGAGAGCATCAGATAGATGGTCAGAATATGATCCCTAACCCTGCTCTCATACTCGGACTATGTGCTTCTTCGGCCCTGCTGCGCTGGGTGGTCTGGATTTCTGGTCCTGTGGTCAGCATTGACAGTGTCCATATAGTGGCATGCAGCGATCAGCATCGGCCCTGCTGGGATAAGAATGGCAGCGCCGTGGATAGCTTGCTCTCATTCAGCCAGTCTGTGGACAGATCCTCAGCCTGCAGACAAAACATTGTCACCCATCACAATGCAGCGGCCATGTCTCTGCGGCAGACCGGTGGCTCGGTTCTTCGTTGGCTTGGCTTGAAAACCCCCAGCTCCGCTGACAGCTCCTCCTTTTGTCCATCACTCAGACCGCCGCAAGCCACCCCTGCAAGCAGGCCAAAGCGCAAACAAGAGGACAAAAAGAGAAAGGATGACACAGATATAAAAGCCCTCCCCCTGGCTTCCTCTAATCCAATTAGAGGGCTGTAAATTTGATTGGAGCCCTGAGAGTGTGCCTTCAGCTGTCCGTCATTAGCGAGTGGTGAGAGGGGGTTCATACCTCATAGCAGAGGTAAAGACTGAGATCAGAGTACAAGGAGACACGTATGTGAAAATGGAACTGCAAAGGACATGTTTGGATATTGTAAACCGTAAGAAAATAATATGTAGAAAAACAGAAAAGATGCCAGGACATTATGAAAAGTTGAATGAAAATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157859 lncRNA upstream 3138 3418423 ~ 3418690 (+) True G138926
TU157858 lncRNA upstream 3880 3417684 ~ 3417948 (+) True G138925
TU157827 lncRNA upstream 101297 3319283 ~ 3320531 (+) True G138904
TU157807 lncRNA upstream 106996 3309830 ~ 3314832 (+) True G138884
TU157815 lncRNA upstream 166621 3254930 ~ 3255207 (+) True G138892
TU157892 lncRNA downstream 10763 3447979 ~ 3503193 (+) True G138959
TU157839 lncRNA downstream 47171 3484387 ~ 3486647 (+) False G138915
TU157850 lncRNA downstream 55216 3492432 ~ 3497919 (+) True G138918
TU157887 lncRNA downstream 70306 3507522 ~ 3514673 (+) True G138954
TU157893 lncRNA downstream 156386 3593602 ~ 3593743 (+) True G138960
CI01000027_03335011_03357910.mRNA mRNA upstream 63551 3335011 ~ 3358277 (+) True CI01000027_03335011_03357910
CI01000027_03278134_03279807.mRNA mRNA upstream 140806 3278134 ~ 3281022 (+) True CI01000027_03278134_03279807
CI01000027_03243374_03247133.mRNA mRNA upstream 174658 3243154 ~ 3247170 (+) True CI01000027_03243374_03247133
CI01000027_03233523_03240000.mRNA mRNA upstream 181826 3233523 ~ 3240002 (+) True CI01000027_03233523_03240000
CI01000027_03212432_03231800.mRNA mRNA upstream 189966 3212432 ~ 3231862 (+) True CI01000027_03212432_03231800
CI01000027_03470743_03477848.mRNA mRNA downstream 33404 3470620 ~ 3479641 (+) True CI01000027_03470743_03477848
CI01000027_03524553_03546701.mRNA mRNA downstream 86391 3523607 ~ 3546701 (+) True CI01000027_03524553_03546701
CI01000027_03570192_03600805.mRNA mRNA downstream 132976 3570192 ~ 3600805 (+) False CI01000027_03570192_03600805
CI01000027_03610825_03621755.mRNA mRNA downstream 173527 3610743 ~ 3621892 (+) True CI01000027_03610825_03621755
CI01000027_03660816_03671233.mRNA mRNA downstream 223600 3660816 ~ 3671515 (+) True CI01000027_03660816_03671233
TU157376 other upstream 1744968 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 1914012 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 2422647 995970 ~ 999181 (+) True G138290
TU157065 other upstream 2552253 855388 ~ 869575 (+) False G138247
TU157051 other upstream 2590145 829774 ~ 831683 (+) True G138238
TU157841 other downstream 47171 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 64856 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 1300182 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 1300182 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 1300182 4737398 ~ 4774262 (+) True G140436

Expression Profile