RNA id: CI01000027_03783310_03784541.mRNA



Basic Information


Item Value
RNA id CI01000027_03783310_03784541.mRNA
length 805
RNA type mRNA
GC content 0.43
exon number 3
gene id CI01000027_03783310_03784541
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3782922 ~ 3784541 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACATAAAACATACCAATGTACACTCTCTTCTAACCCAGTGTCCTATATTTACAAGAAAGTGGTTTGGAAATGAGGCAGGAAATGTTTAGAGTAGGCTATAGGTCTAACGACAACACCTTCACCTCGGCTGAAAACATCGCGATGTAGGAGGGATCTTTCGCAGCGGTTCATTCTCCGCCTATATGTCAAAGCCTCTGGAAGCAAGTGCATGAAACTTTGAGGAACCATGCCGAAAACTATTAAGGATCACCTGGAGAATACCTTTGAGGATCTGGGGGAGGGAAATCTAAAAAAATTTAAAATTAAATTGCGCGATCGGAAGGAAGAACCGCGCATACGACAAGCTACAATTGAAAAAGTTAAAGACGCTCTAGATCTCGCTGATTTAATGGTGAACACTTTCACATTGAATGGCGCGGGTCCTGTAACACTCGAAATATTAGAGGTTATTAACTGTCATGAACTGGCAGCGGAGCTCAGAGAGAACATAGGAGACGCTCCAGTTGTTCCTGGACCTGGACCGGGGGCTCCATCTACTGAGCACTTCATCGATAAGAATCGGACAGAACTGATAGCACGAGTTAACAATATGGATGCCATCCTAGATGAACTTCATCAGAAGAAAGTCATCTCATTCGAGGATTACAGTAACATTCGTGCTGAGAAAACCAAACCGAATAAGATGAGAGAGTTATTAATGGGCCCAATTAACTCTGCTGGCACTAGAGGGAAAGATGCTTTATATCAAGCTCTCAAGAAGTCAGATCCCTTACTAGTTGAAGACCTTGAGTCTCAGAGAAAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157936 lncRNA upstream 38684 3744009 ~ 3744238 (+) True G139002
TU157918 lncRNA upstream 157314 3625313 ~ 3625608 (+) True G138985
TU157893 lncRNA upstream 183111 3593602 ~ 3593743 (+) True G138960
TU157887 lncRNA upstream 268249 3507522 ~ 3514673 (+) True G138954
TU157850 lncRNA upstream 285003 3492432 ~ 3497919 (+) True G138918
TU157891 lncRNA downstream 2814 3787355 ~ 3787850 (+) True G138958
TU157950 lncRNA downstream 39505 3824046 ~ 3824435 (+) True G139016
TU157961 lncRNA downstream 53664 3838205 ~ 3840442 (+) True G139027
TU157957 lncRNA downstream 80472 3865013 ~ 3865517 (+) True G139023
TU159563 lncRNA downstream 348297 4132838 ~ 4133069 (+) True G140381
CI01000027_03776983_03781753.mRNA mRNA upstream 1031 3776138 ~ 3781891 (+) True CI01000027_03776983_03781753
CI01000027_03771203_03774232.mRNA mRNA upstream 8403 3769395 ~ 3774519 (+) True CI01000027_03771203_03774232
CI01000027_03744339_03748166.mRNA mRNA upstream 34756 3744339 ~ 3748166 (+) True CI01000027_03744339_03748166
CI01000027_03736903_03741917.mRNA mRNA upstream 40240 3736903 ~ 3742682 (+) True CI01000027_03736903_03741917
CI01000027_03718436_03732820.mRNA mRNA upstream 49152 3718436 ~ 3733770 (+) True CI01000027_03718436_03732820
CI01000027_03798333_03830899.mRNA mRNA downstream 13403 3797944 ~ 3831143 (+) True CI01000027_03798333_03830899
CI01000027_03845911_03849635.mRNA mRNA downstream 61370 3845911 ~ 3849670 (+) True CI01000027_03845911_03849635
CI01000027_03851507_03856447.mRNA mRNA downstream 66966 3851507 ~ 3856517 (+) True CI01000027_03851507_03856447
CI01000027_03863467_03864594.mRNA mRNA downstream 77955 3862496 ~ 3864877 (+) True CI01000027_03863467_03864594
CI01000027_03879680_03890591.mRNA mRNA downstream 94733 3879274 ~ 3891737 (+) True CI01000027_03879680_03890591
TU157886 other upstream 262857 3502072 ~ 3520065 (+) True G138953
TU157841 other upstream 296275 3484387 ~ 3486647 (+) True G138915
TU157376 other upstream 2106062 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 2275106 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 2783741 995970 ~ 999181 (+) True G138290
TU159628 other downstream 952857 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 952857 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 952857 4737398 ~ 4774262 (+) True G140436
TU159637 other downstream 995876 4780417 ~ 4784404 (+) False G140440
TU159638 other downstream 995876 4780417 ~ 4784404 (+) False G140440

Expression Profile