RNA id: CI01000027_04774573_04774740.mRNA



Basic Information


Item Value
RNA id CI01000027_04774573_04774740.mRNA
length 406
RNA type mRNA
GC content 0.38
exon number 1
gene id CI01000027_04774573_04774740
representative False

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4774573 ~ 4775489 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCTCAGAAGGACCCTGCTGCCATAGACAGGATTATGAAGGATCTGGACTCTAATGGAGATGGAGAGGTGAATTTTGAAGAGTTTGTGTCTCTTGTGGTGGGCCTGTCCATTGCCTGTGAACAGCTCTACCAGAAGCAGATACAAGCAGCGGGTGTCAAAAAGCATTAAATAGCCAAACATGAAGGGAAAAAGGAATGTCTGTTTTTCTGTTTCGTCATTTTGTTAATATATTTTACGCTTTCAGCCACATGCCTCGATTTGAAGTTGTTACTACAGTTACACTGTATGTATGTATGTTTTGTCATTTTTGTCTAGTGATGTTCAAATTTACTTGTAGTTTTTATAAGTATTTGCATTAGACACAAAATATATCGTTCTCAGAAGTCCTGTAAGTTTCACCATGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU159656 lncRNA upstream 37905 4733708 ~ 4736668 (+) True G140455
TU159804 lncRNA upstream 65578 4708788 ~ 4708995 (+) True G140597
TU159803 lncRNA upstream 66067 4708225 ~ 4708506 (+) True G140596
TU159794 lncRNA upstream 81869 4692134 ~ 4692704 (+) True G140587
TU159725 lncRNA upstream 103096 4671107 ~ 4671477 (+) True G140522
TU159627 lncRNA downstream 2226 4777204 ~ 4779338 (+) False CI01000027_04777135_04777760
TU159623 lncRNA downstream 37438 4812416 ~ 4822645 (+) False G140435
TU159624 lncRNA downstream 37438 4812416 ~ 4822493 (+) False G140435
TU159622 lncRNA downstream 37462 4812440 ~ 4822493 (+) True G140435
TU159676 lncRNA downstream 49962 4824940 ~ 4825988 (+) True G140475
CI01000027_04768212_04770488.mRNA mRNA upstream 3886 4768212 ~ 4770687 (+) True CI01000027_04768212_04770488
CI01000027_04725469_04727486.mRNA mRNA upstream 46290 4723893 ~ 4728283 (+) True CI01000027_04725469_04727486
CI01000027_04713891_04717190.mRNA mRNA upstream 57214 4713780 ~ 4717359 (+) True CI01000027_04713891_04717190
CI01000027_04655825_04667764.mRNA mRNA upstream 106706 4654783 ~ 4667867 (+) True CI01000027_04655825_04667764
CI01000027_04551022_04551875.mRNA mRNA upstream 222580 4550712 ~ 4551993 (+) True CI01000027_04551022_04551875
CI01000027_04777135_04777760.mRNA mRNA downstream 1509 4776487 ~ 4779313 (+) False CI01000027_04777135_04777760
CI01000027_04835989_04851147.mRNA mRNA downstream 61011 4835989 ~ 4851178 (+) True CI01000027_04835989_04851147
CI01000027_04860802_04872130.mRNA mRNA downstream 85824 4860802 ~ 4872566 (+) True CI01000027_04860802_04872130
CI01000027_04887494_04956477.mRNA mRNA downstream 112338 4887316 ~ 4957488 (+) True CI01000027_04887494_04956477
CI01000027_04978217_04987503.mRNA mRNA downstream 203239 4978217 ~ 4987503 (+) False CI01000027_04978217_04987503
TU157886 other upstream 1254508 3502072 ~ 3520065 (+) True G138953
TU157841 other upstream 1287926 3484387 ~ 3486647 (+) True G138915
TU157376 other upstream 3097713 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 3266757 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 3775392 995970 ~ 999181 (+) True G138290
TU159637 other downstream 5439 4780417 ~ 4784404 (+) False G140440
TU159638 other downstream 5439 4780417 ~ 4784404 (+) False G140440
TU159641 other downstream 5439 4780417 ~ 4785660 (+) False G140440
TU159640 other downstream 7464 4782442 ~ 4784404 (+) True G140440
TU159892 other downstream 273945 5048923 ~ 5055939 (+) True G140682

Expression Profile