RNA id: TU159630


Basic Information

Item Value
RNA id TU159630
length 254
RNA type TUCP
GC content 0.39
exon number 2
gene id G140436
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4737398 ~ 4774262 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGCCCTCATGTCGTTCCACACCCGTAAGATCTTCGTTCATCTTCGGAACACAAATTACGATATTTTTGATGAAATCAAAAATAGTAGTGCAGGCTTCCTTGTTTATGTCCGAATGTCAACTCAGTAGGCCAAAGCTGAACATGTGAGCAGCATGACGCATGCATGTAATGCTGACACAGNNNNNNNNNNNNCATCCCTGAGTCGCAAAGAGCTCAAATTGCTGATGGAGAAAGAGCTGTCTAGCTTTCTGAAGTCTCAGAAGGACCCTGCTGCCATAGACAGGATTATGAAGGATCTGGACTCTAATGGAGATGGAGAGGTGAATTTTGAAGAGTTTGTGTCTCTTGTGGTGGGCCTGTCCATTGCCTGTGAACAGCTCTACCAGAAGCAGATACAAGCAGCGGGTGTCAAAAAGCATTAAATAGCCAAACATGAAGGGAAAAAGGAATGTCTGTTTTTCTGTTTCGTCATTTTGTTAATATATTTTACGCTTTCAGCCACATGCCTCGATTTGAAGTTGTTACTACAGTTACACTGTATGTATGTATGTTTTGTCATTTTTGTCTAGTGATGTTCAAATTTACTTGTAGTTTTTATAAGTATTTGCATTAGACACAAAATATATCGTTCTCAGAAGTCCTGTAAGTTCCACCATGGAAATAAACACTCAATGATTTTCCAGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159656 lncRNA upstream 730 4733708 ~ 4736668 (+) True G140455
TU159804 lncRNA upstream 28403 4708788 ~ 4708995 (+) True G140597
TU159803 lncRNA upstream 28892 4708225 ~ 4708506 (+) True G140596
TU159794 lncRNA upstream 44694 4692134 ~ 4692704 (+) True G140587
TU159725 lncRNA upstream 65921 4671107 ~ 4671477 (+) True G140522
TU159623 lncRNA downstream 33078 4812416 ~ 4822645 (+) False G140435
TU159624 lncRNA downstream 33078 4812416 ~ 4822493 (+) False G140435
TU159622 lncRNA downstream 33102 4812440 ~ 4822493 (+) True G140435
TU159676 lncRNA downstream 45602 4824940 ~ 4825988 (+) True G140475
TU159840 lncRNA downstream 53674 4833012 ~ 4833260 (+) True G140633
CI01000027_04725469_04727486.mRNA mRNA upstream 9115 4723893 ~ 4728283 (+) True CI01000027_04725469_04727486
CI01000027_04713891_04717190.mRNA mRNA upstream 20039 4713780 ~ 4717359 (+) True CI01000027_04713891_04717190
CI01000027_04655825_04667764.mRNA mRNA upstream 69531 4654783 ~ 4667867 (+) True CI01000027_04655825_04667764
CI01000027_04551022_04551875.mRNA mRNA upstream 185405 4550712 ~ 4551993 (+) True CI01000027_04551022_04551875
CI01000027_04537765_04549872.mRNA mRNA upstream 187469 4537342 ~ 4549929 (+) True CI01000027_04537765_04549872
CI01000027_04835989_04851147.mRNA mRNA downstream 56651 4835989 ~ 4851178 (+) True CI01000027_04835989_04851147
CI01000027_04860802_04872130.mRNA mRNA downstream 81464 4860802 ~ 4872566 (+) True CI01000027_04860802_04872130
CI01000027_04887494_04956477.mRNA mRNA downstream 107978 4887316 ~ 4957488 (+) True CI01000027_04887494_04956477
CI01000027_04978217_04987503.mRNA mRNA downstream 198879 4978217 ~ 4987503 (+) False CI01000027_04978217_04987503
CI01000027_05018992_05033275.mRNA mRNA downstream 238922 5018260 ~ 5034290 (+) True CI01000027_05018992_05033275
TU157886 other upstream 1217333 3502072 ~ 3520065 (+) True G138953
TU157841 other upstream 1250751 3484387 ~ 3486647 (+) True G138915
TU157376 other upstream 3060538 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 3229582 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 3738217 995970 ~ 999181 (+) True G138290
TU159637 other downstream 1079 4780417 ~ 4784404 (+) False G140440
TU159638 other downstream 1079 4780417 ~ 4784404 (+) False G140440
TU159641 other downstream 1079 4780417 ~ 4785660 (+) False G140440
TU159640 other downstream 3104 4782442 ~ 4784404 (+) True G140440
TU159892 other downstream 269585 5048923 ~ 5055939 (+) True G140682

Expression Profile